Assembly
ASM762v1
BioProject PRJNA81 · BioSample SAMN02603289
GENOME-RESOLVED EVIDENCE
GCA_000007625.1
Clostridium tetani · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2873333 bp · GC 28.500%
Completeness 98.140% · contamination 0.160%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 2/3 | 0.667 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 1/8 | 0.125 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 4/4 | 1.000 | Complete marker set |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| etfB | electron transfer flavoprotein beta subunit | 1 |
| accD | acetyl-CoA carboxylase carboxyltransferase beta | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| bcd | butyryl-CoA dehydrogenase | 5 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| bcdCTC_00477 | AAO35106.1 | OG0000034 | AE015927.1:481986–483125 - | acyl-coA/butyryl-coA dehydrogenase [Clostridium tetani E88] |
| bcdCTC_02081 | AAO36580.1 | OG0000034 | AE015927.1:2210462–2211646 + | (3-hydroxy)butyryl-coA dehydrogenase [Clostridium tetani E88] |
| bcdCTC_02084 | AAO36583.1 | OG0000034 | AE015927.1:2213567–2214745 - | butyryl-coA dehydrogenase [Clostridium tetani E88] |
| fixACTC_00711 | AAO35314.1 | OG0000098 | AE015927.1:734977–735756 + | electron transfer flavoprotein beta subunit fixA [Clostridium tetani E88] |
| ldhCTC_01998 | AAO36504.1 | OG0000131 | AE015927.1:2126483–2127445 - | L-lactate dehydrogenase [Clostridium tetani E88] |
| hbdCTC_02423 | AAO36889.1 | OG0000229 | AE015927.1:2562718–2563566 - | 3-hydroxybutyryl-coA dehydrogenase [Clostridium tetani E88] |
| thlCTC_00312 | AAO34954.1 | OG0000234 | AE015927.1:294440–295615 + | acetyl-coA acetyltransferase [Clostridium tetani E88] |
| accDCTC_00135 | AAO34787.1 | OG0000403 | AE015927.1:93861–95588 + | acetyl-coA carboxylase carboxyl transferase subunit beta/alpha [Clostridium tetani E88] |
| lctPCTC_00972 | AAO35561.1 | OG0001228 | AE015927.1:1038823–1040343 + | L-lactate permease [Clostridium tetani E88] |
| bcdCTC_00710 | AAO35313.1 | OG0001311 | AE015927.1:733820–734959 + | acyl-coA/butyryl-coA dehydrogenase [Clostridium tetani E88] |
| bcdCTC_02426 | AAO36892.1 | OG0001311 | AE015927.1:2565424–2566563 - | butyryl-coA dehydrogenase [Clostridium tetani E88] |
| crtCTC_02427 | AAO36893.1 | OG0001394 | AE015927.1:2566577–2567359 - | putative crotonase [Clostridium tetani E88] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.