EXPLAINABLE CONSORTIUM DESIGN

Synergistic pathway designer

Select organisms and optional operating conditions. Scores summarize curated roles, annotations, interactions, and documented culture ranges; they do not predict reactor performance.

Proposed culture conditions
Candidate organisms
Choose one or more organisms

Genome-supported candidates

These candidates have a complete reverse β-oxidation marker rule in at least one assembly. This prioritizes review; it does not demonstrate MCFA production.

Caproicibacter sp. BJN0012Caproiciproducens puteilutiCaproiciproducens sp. NJN-50Clostridium acetobutylicumClostridium botulinumClostridium butyricumClostridium gelidumClostridium neonataleClostridium novyiClostridium perfringensClostridium tetaniLacrimispora xylanolytica

LITERATURE-GROUNDED EXPERIMENTAL DESIGN

Experimental design evidence

Explore published culture conditions and measured MCFA outcomes alongside the consortium designer. Every observation remains linked to its study, experiment, sample, unit, and measurement basis.

Structured condition–outcome measurements are being curated

The literature records below are integrated now; normalized measurements will add interactive plots automatically.

Experimental-design literature

StudyPublic identifierCurated experimental designsNotes
Direct Conversion of Food Waste Extract into Caproate: Metagenomics Assessment of Chain Elongation Process10.3390/pr9020327Design details awaiting structured curation—
Genome Sequence of the Caproic Acid-Producing Bacterium Caproiciproducens galactitolivorans BS-1T10.1128/MRA.00540-19Design details awaiting structured curation—
Genome Sequence of the Ruminal Bacterium Megasphaera elsdenii10.1128/JB.05861-11Design details awaiting structured curation—
Production of medium-chain fatty acids and higher alcohols by a synthetic co-culture grown on carbon monoxide or syngas10.1186/s13068-016-0495-0Design details awaiting structured curation—
Revealing glucose- and lactate-based chain elongation in Caproicibacterium lactatifermentans10.1128/spectrum.01723-22Design details awaiting structured curation—
The genome of Clostridium kluyveri, a strict anaerobe with unique metabolic features10.1073/pnas.0711093105Design details awaiting structured curation—