Assembly
ASM876v1
BioProject PRJNA77 · BioSample SAMN02603243
GENOME-RESOLVED EVIDENCE
GCA_000008765.1
Clostridium acetobutylicum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4132880 bp · GC 31.000%
Completeness 97.920% · contamination 0.930%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 1/3 | 0.333 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accA | acetyl-CoA carboxylase carboxyltransferase alpha | 1 |
| accD | acetyl-CoA carboxylase carboxyltransferase beta | 1 |
| fabG | 3-oxoacyl-ACP reductase | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| bcd | butyryl-CoA dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 3 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
| coat | butyrate/acetoacetate CoA-transferase | 2 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| ldhCA_C0267 | AAK78248.1 | OG0000131 | AE001437.1:298777–299718 + | L-lactate dehydrogenase [Clostridium acetobutylicum ATCC 824] |
| ctfaCA_P0163 | AAK76908.1 | OG0000158 | AE001438.3:178459–179115 + | Butyrate-acetoacetate COA-transferase subunit A (plasmid) [Clostridium acetobutylicum ATCC 824] |
| ctfbCA_P0164 | AAK76909.1 | OG0000158 | AE001438.3:179117–179782 + | Butyrate-acetoacetate COA-transferase subunit B (plasmid) [Clostridium acetobutylicum ATCC 824] |
| thlCA_C2873 | AAK80816.1 | OG0000234 | AE001437.1:3005963–3007141 - | Acetyl-CoA acetyltransferase [Clostridium acetobutylicum ATCC 824] |
| accDCA_C3569 | AAK81492.1 | OG0000403 | AE001437.1:3769912–3770769 - | Acetyl-CoA carboxylase beta subunit [Clostridium acetobutylicum ATCC 824] |
| accACA_C3568 | AAK81491.1 | OG0000885 | AE001437.1:3769071–3769895 - | Acetyl-CoA carboxylase alpha subunit [Clostridium acetobutylicum ATCC 824] |
| bcdCA_C2711 | AAK80657.1 | OG0001311 | AE001437.1:2834513–2835652 - | Butyryl-CoA dehydrogenase [Clostridium acetobutylicum ATCC 824] |
| crtCA_C2712 | AAK80658.1 | OG0001394 | AE001437.1:2835666–2836451 - | Crotonase (3-hydroxybutyryl-COA dehydratase) [Clostridium acetobutylicum ATCC 824] |
| fabGCA_C3462 | AAK81391.1 | OG0004652 | AE001437.1:3661697–3662485 + | 3-oxoacyl-acyl carrier protein reductase [Clostridium acetobutylicum ATCC 824] |
| fadBCA_C2012 | AAK79971.1 | OG0014900 | AE001437.1:2125547–2126236 - | Enoyl-CoA hydratase [Clostridium acetobutylicum ATCC 824] |
| fadBCA_C2016 | AAK79975.1 | OG0014902 | AE001437.1:2127838–2128575 - | Enoyl-CoA hydratase [Clostridium acetobutylicum ATCC 824] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.