Assembly
ASM968v1
BioProject PRJNA79 · BioSample SAMD00061119
GENOME-RESOLVED EVIDENCE
GCA_000009685.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3085740 bp · GC 28.500%
Completeness 97.380% · contamination 0.430%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 1/3 | 0.333 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 0/8 | 0.000 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| etfB | electron transfer flavoprotein beta subunit | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| fixBBAB82004.1 | BAB82004.1 | OG0000082 | BA000016.3:2642704–2643711 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens str. 13] |
| etfBBAB82005.1 | BAB82005.1 | OG0000098 | BA000016.3:2643733–2644512 - | electron transfer flavoprotein beta subunit [Clostridium perfringens str. 13] |
| ldhBAB79809.1 | BAB79809.1 | OG0000131 | BA000016.3:141837–142790 - | L-lactate dehydrogenase [Clostridium perfringens str. 13] |
| atoBBAB81901.1 | BAB81901.1 | OG0000234 | BA000016.3:2515294–2516472 - | acetyl-CoA acetyltransferase [Clostridium perfringens str. 13] |
| CPE0310BAB80016.1 | BAB80016.1 | OG0001228 | BA000016.3:393902–395425 + | probable lactate permease [Clostridium perfringens str. 13] |
| CPE0095BAB79801.1 | BAB79801.1 | OG0001639 | BA000016.3:131191–131967 + | crotonase [Clostridium perfringens str. 13] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.