Assembly
ASM1328v1
BioProject PRJNA304 · BioSample SAMN02604008
GENOME-RESOLVED EVIDENCE
GCA_000013285.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3256683 bp · GC 28.500%
Completeness 97.900% · contamination 0.950%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 1/3 | 0.333 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accA | acetyl-CoA carboxylase carboxyltransferase alpha | 1 |
| accD | acetyl-CoA carboxylase carboxyltransferase beta | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| bcd | butyryl-CoA dehydrogenase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| bcdCPF_0092 | ABG82390.1 | OG0000034 | CP000246.1:110040–111176 + | butyryl-CoA dehydrogenase [Clostridium perfringens ATCC 13124] |
| ldhCPF_0098 | ABG84272.1 | OG0000131 | CP000246.1:118161–119114 - | L-lactate dehydrogenase [Clostridium perfringens ATCC 13124] |
| hbdCPF_2581 | ABG82281.1 | OG0000229 | CP000246.1:2846494–2847342 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens ATCC 13124] |
| thlCPF_2460 | ABG83108.1 | OG0000234 | CP000246.1:2729310–2730488 - | acetyl-CoA acetyltransferase [Clostridium perfringens ATCC 13124] |
| accDCPF_1331 | ABG82303.1 | OG0000403 | CP000246.1:1507652–1508530 + | acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Clostridium perfringens ATCC 13124] |
| accACPF_1332 | ABG84403.1 | OG0000885 | CP000246.1:1508523–1509338 + | acetyl-CoA carboxylase, carboxyl transferase, alpha subunit [Clostridium perfringens ATCC 13124] |
| lctPCPF_0307 | ABG83989.2 | OG0001228 | CP000246.1:365231–366763 + | L-lactate permease [Clostridium perfringens ATCC 13124] |
| bcdCPF_2584 | ABG84745.1 | OG0001311 | CP000246.1:2849283–2850422 - | butyryl-CoA dehydrogenase [Clostridium perfringens ATCC 13124] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.