Assembly
ASM1384v2
BioProject PRJNA12521 · BioSample SAMN02604026
GENOME-RESOLVED EVIDENCE
GCA_000013845.2
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2921996 bp · GC 28.000%
Completeness 98.110% · contamination 0.500%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 1/3 | 0.333 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accA | acetyl-CoA carboxylase carboxyltransferase alpha | 1 |
| accD | acetyl-CoA carboxylase carboxyltransferase beta | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| bcd | butyryl-CoA dehydrogenase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| ldhCPR_0102 | ABG87518.1 | OG0000131 | CP000312.1:130753–131706 - | L-lactate dehydrogenase [Clostridium perfringens SM101] |
| hbdCPR_2283 | ABG86197.1 | OG0000229 | CP000312.1:2507420–2508268 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens SM101] |
| thlCPR_2170 | ABG86544.1 | OG0000234 | CP000312.1:2395858–2397036 - | acetyl-CoA acetyltransferase [Clostridium perfringens SM101] |
| accDCPR_1143 | ABG86370.1 | OG0000403 | CP000312.1:1288369–1289247 + | acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Clostridium perfringens SM101] |
| accACPR_1144 | ABG87651.1 | OG0000885 | CP000312.1:1289240–1290055 + | acetyl-CoA carboxylase, carboxyl transferase, alpha subunit [Clostridium perfringens SM101] |
| lctPCPR_0302 | ABG85848.1 | OG0001228 | CP000312.1:361538–363061 + | L-lactate permease [Clostridium perfringens SM101] |
| bcdCPR_2286 | ABG86549.1 | OG0001311 | CP000312.1:2510209–2511348 - | butyryl-CoA dehydrogenase [Clostridium perfringens SM101] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.