Assembly
ASM1412v1
BioProject PRJNA16820 · BioSample SAMN02603464
GENOME-RESOLVED EVIDENCE
GCA_000014125.1
Clostridium novyi · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2547720 bp · GC 29.000%
Completeness 100.000% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 1/3 | 0.333 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 4/4 | 1.000 | Complete marker set |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accA | acetyl-CoA carboxylase carboxyltransferase alpha | 1 |
| accD | acetyl-CoA carboxylase carboxyltransferase beta | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| bcd | butyryl-CoA dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 2 |
| thl | acetyl-CoA acetyltransferase/thiolase | 2 |
| coat | butyrate/acetoacetate CoA-transferase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| bcdNT01CX_2324 | ABK60827.1 | OG0000034 | CP000382.1:1522566–1523705 - | (3-hydroxy)butyryl-coA dehydrogenase [Clostridium novyi NT] |
| ldhNT01CX_0236 | ABK61977.1 | OG0000131 | CP000382.1:1906872–1907819 + | L-lactate dehydrogenase [Clostridium novyi NT] |
| coatNT01CX_0277 | ABK62369.1 | OG0000158 | CP000382.1:1953746–1954399 - | Butyrate-acetoacetate CoA-transferase subunit B [Clostridium novyi NT] |
| bhbDNT01CX_0470 | ABK61250.1 | OG0000229 | CP000382.1:2155289–2156137 - | 3-hydroxybutyryl-coA dehydrogenase [Clostridium novyi NT] |
| bhbDNT01CX_0604 | ABK60549.1 | OG0000229 | CP000382.1:2284711–2285556 - | 3-hydroxybutyryl-CoA dehydrogenase (Beta-hydroxybutyryl-CoA dehydrogenase) (BHBD) [Clostridium novyi NT] |
| thlNT01CX_0538 | ABK62507.1 | OG0000234 | CP000382.1:2220728–2221906 - | acetyl-CoA acetyltransferase [Clostridium novyi NT] |
| thlNT01CX_0603 | ABK62550.1 | OG0000234 | CP000382.1:2283455–2284636 - | acetyl-CoA acetyltransferase [Clostridium novyi NT] |
| accDNT01CX_0930 | ABK61395.1 | OG0000403 | CP000382.1:50029–50892 + | acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Clostridium novyi NT] |
| accANT01CX_0931 | ABK62223.1 | OG0000885 | CP000382.1:50916–51761 + | acetyl-CoA carboxylase, carboxyl transferase, alpha subunit [Clostridium novyi NT] |
| lctPNT01CX_1609 | ABK61640.1 | OG0001228 | CP000382.1:808982–810505 + | L-lactate permease [Clostridium novyi NT] |
| bcdNT01CX_0473 | ABK62038.1 | OG0001311 | CP000382.1:2158088–2159227 - | Acyl-CoA dehydrogenase, short-chain specific (SCAD)(Butyryl-CoA dehydrogenase) [Clostridium novyi NT] |
| crtNT01CX_0474 | ABK62010.1 | OG0001394 | CP000382.1:2159257–2160042 - | enoyl-CoA hydratase/isomerase family protein [Clostridium novyi NT] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.