Assembly
ASM1696v1
BioProject PRJNA12637 · BioSample SAMN02598276
GENOME-RESOLVED EVIDENCE
GCA_000016965.1
Clostridium beijerinckii · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 6000632 bp · GC 30.000%
Completeness 96.950% · contamination 2.680%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accA | acetyl-CoA carboxylase carboxyltransferase alpha | 1 |
| accD | acetyl-CoA carboxylase carboxyltransferase beta | 1 |
| ldh | L-lactate dehydrogenase | 4 |
| crt | crotonase/enoyl-CoA hydratase | 5 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 2 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| ldhCbei_1014 | ABR33198.1 | OG0000131 | CP000721.1:1215791–1216741 + | L-lactate dehydrogenase [Clostridium beijerinckii NCIMB 8052] |
| ldhCbei_2789 | ABR34939.1 | OG0000131 | CP000721.1:3242272–3243225 - | L-lactate dehydrogenase [Clostridium beijerinckii NCIMB 8052] |
| ldhCbei_4072 | ABR36182.1 | OG0000131 | CP000721.1:4676262–4677212 - | L-lactate dehydrogenase [Clostridium beijerinckii NCIMB 8052] |
| ldhCbei_4903 | ABR37009.1 | OG0000131 | CP000721.1:5745853–5746800 - | L-lactate dehydrogenase [Clostridium beijerinckii NCIMB 8052] |
| hbdCbei_0325 | ABR32513.1 | OG0000229 | CP000721.1:391440–392288 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium beijerinckii NCIMB 8052] |
| thlCbei_0411 | ABR32599.1 | OG0000234 | CP000721.1:499121–500302 + | acetyl-CoA acetyltransferase [Clostridium beijerinckii NCIMB 8052] |
| thlCbei_3630 | ABR35750.1 | OG0000234 | CP000721.1:4178927–4180105 - | acetyl-CoA acetyltransferase [Clostridium beijerinckii NCIMB 8052] |
| accDCbei_1076 | ABR33260.1 | OG0000403 | CP000721.1:1288650–1289513 + | acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Clostridium beijerinckii NCIMB 8052] |
| accACbei_1077 | ABR33261.1 | OG0000885 | CP000721.1:1289516–1290334 + | acetyl-CoA carboxylase, carboxyl transferase, alpha subunit [Clostridium beijerinckii NCIMB 8052] |
| crtCbei_0321 | ABR32509.1 | OG0001394 | CP000721.1:387416–388201 + | Enoyl-CoA hydratase/isomerase [Clostridium beijerinckii NCIMB 8052] |
| crtCbei_2034 | ABR34202.1 | OG0001394 | CP000721.1:2363994–2364779 + | Enoyl-CoA hydratase/isomerase [Clostridium beijerinckii NCIMB 8052] |
| crtCbei_4544 | ABR36653.1 | OG0001639 | CP000721.1:5261233–5262009 - | Enoyl-CoA hydratase/isomerase [Clostridium beijerinckii NCIMB 8052] |
| crtCbei_2230 | ABR34395.1 | OG0008680 | CP000721.1:2595393–2596223 + | Enoyl-CoA hydratase/isomerase [Clostridium beijerinckii NCIMB 8052] |
| crtCbei_2231 | ABR34396.1 | OG0008680 | CP000721.1:2596366–2597202 + | Enoyl-CoA hydratase/isomerase [Clostridium beijerinckii NCIMB 8052] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.