Assembly
ASM1702v1
BioProject PRJNA19517 · BioSample SAMN02603532
GENOME-RESOLVED EVIDENCE
GCA_000017025.1
Clostridium botulinum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3863450 bp · GC 28.000%
Completeness 99.490% · contamination 0.170%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 1/3 | 0.333 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accA | acetyl-CoA carboxylase carboxyltransferase alpha | 1 |
| accD | acetyl-CoA carboxylase carboxyltransferase beta | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| bcd | butyryl-CoA dehydrogenase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| bcdCLB_3235 | ABS33763.1 | OG0000034 | CP000726.1:3383572–3384711 - | butyryl-CoA dehydrogenase [Clostridium botulinum A str. ATCC 19397] |
| ldhCLB_1540 | ABS35141.1 | OG0000131 | CP000726.1:1623517–1624473 - | L-lactate dehydrogenase [Clostridium botulinum A str. ATCC 19397] |
| hbdCLB_3237 | ABS34557.1 | OG0000229 | CP000726.1:3386108–3386938 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium botulinum A str. ATCC 19397] |
| accDCLB_3675 | ABS32561.1 | OG0000403 | CP000726.1:3815415–3816284 - | acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Clostridium botulinum A str. ATCC 19397] |
| accACLB_3674 | ABS35086.1 | OG0000885 | CP000726.1:3814529–3815368 - | acetyl-CoA carboxylase, carboxyl transferase, alpha subunit [Clostridium botulinum A str. ATCC 19397] |
| lctPCLB_1045 | ABS35308.1 | OG0001228 | CP000726.1:1078763–1080286 + | L-lactate permease [Clostridium botulinum A str. ATCC 19397] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.