Assembly
ASM1704v1
BioProject PRJNA19521 · BioSample SAMN02603534
GENOME-RESOLVED EVIDENCE
GCA_000017045.1
Clostridium botulinum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3760560 bp · GC 28.000%
Completeness 99.490% · contamination 0.170%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 1/3 | 0.333 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accA | acetyl-CoA carboxylase carboxyltransferase alpha | 1 |
| accD | acetyl-CoA carboxylase carboxyltransferase beta | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| bcd | butyryl-CoA dehydrogenase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| bcdCLC_3109 | ABS37545.1 | OG0000034 | CP000727.1:3280679–3281818 - | butyryl-CoA dehydrogenase [Clostridium botulinum A str. Hall] |
| ldhCLC_1552 | ABS36418.1 | OG0000131 | CP000727.1:1624003–1624959 - | L-lactate dehydrogenase [Clostridium botulinum A str. Hall] |
| hbdCLC_3111 | ABS38987.1 | OG0000229 | CP000727.1:3283215–3284045 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium botulinum A str. Hall] |
| accDCLC_3573 | ABS36878.1 | OG0000403 | CP000727.1:3712525–3713394 - | acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Clostridium botulinum A str. Hall] |
| accACLC_3572 | ABS37874.1 | OG0000885 | CP000727.1:3711639–3712478 - | acetyl-CoA carboxylase, carboxyl transferase, alpha subunit [Clostridium botulinum A str. Hall] |
| lctPCLC_1058 | ABS36980.1 | OG0001228 | CP000727.1:1079316–1080839 + | L-lactate permease [Clostridium botulinum A str. Hall] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.