Assembly
ASM1706v1
BioProject PRJNA19519 · BioSample SAMN02603533
GENOME-RESOLVED EVIDENCE
GCA_000017065.1
Clostridium botulinum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4012918 bp · GC 28.500%
Completeness 99.350% · contamination 0.170%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 1/3 | 0.333 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accA | acetyl-CoA carboxylase carboxyltransferase alpha | 1 |
| accD | acetyl-CoA carboxylase carboxyltransferase beta | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| bcd | butyryl-CoA dehydrogenase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| bcdCLI_3338 | ABS40178.1 | OG0000034 | CP000728.1:3500564–3501703 - | butyryl-CoA dehydrogenase [Clostridium botulinum F str. Langeland] |
| ldhCLI_1599 | ABS40695.1 | OG0000131 | CP000728.1:1693979–1694935 - | L-lactate dehydrogenase [Clostridium botulinum F str. Langeland] |
| hbdCLI_3340 | ABS40712.1 | OG0000229 | CP000728.1:3503100–3503930 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium botulinum F str. Langeland] |
| accDCLI_3820 | ABS39400.1 | OG0000403 | CP000728.1:3947359–3948228 - | acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Clostridium botulinum F str. Langeland] |
| accACLI_3819 | ABS40323.1 | OG0000885 | CP000728.1:3946473–3947312 - | acetyl-CoA carboxylase, carboxyl transferase, alpha subunit [Clostridium botulinum F str. Langeland] |
| lctPCLI_1087 | ABS41494.1 | OG0001228 | CP000728.1:1130103–1131626 + | L-lactate permease [Clostridium botulinum F str. Langeland] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.