Assembly
ASM1930v1
BioProject PRJNA28505 · BioSample SAMN02603535
GENOME-RESOLVED EVIDENCE
GCA_000019305.1
Clostridium botulinum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4107013 bp · GC 28.000%
Completeness 99.430% · contamination 0.510%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 1/3 | 0.333 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accA | acetyl-CoA carboxylase carboxyltransferase alpha | 1 |
| accD | acetyl-CoA carboxylase carboxyltransferase beta | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| bcd | butyryl-CoA dehydrogenase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| bcdCLD_1332 | ACA44294.1 | OG0000034 | CP000939.1:3475906–3477045 - | butyryl-CoA dehydrogenase [Clostridium botulinum B1 str. Okra] |
| ldhCLD_3035 | ACA45332.1 | OG0000131 | CP000939.1:1684608–1685564 - | L-lactate dehydrogenase [Clostridium botulinum B1 str. Okra] |
| hbdCLD_1330 | ACA44490.1 | OG0000229 | CP000939.1:3478442–3479272 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium botulinum B1 str. Okra] |
| accDCLD_0891 | ACA46160.1 | OG0000403 | CP000939.1:3910239–3911108 - | acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Clostridium botulinum B1 str. Okra] |
| accACLD_0892 | ACA44171.1 | OG0000885 | CP000939.1:3909353–3910192 - | acetyl-CoA carboxylase, carboxyl transferase, alpha subunit [Clostridium botulinum B1 str. Okra] |
| lctPCLD_3561 | ACA44586.1 | OG0001228 | CP000939.1:1116071–1117594 + | L-lactate permease [Clostridium botulinum B1 str. Okra] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.