Assembly
ASM1954v1
BioProject PRJNA28507 · BioSample SAMN02603536
GENOME-RESOLVED EVIDENCE
GCA_000019545.1
Clostridium botulinum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4259691 bp · GC 28.000%
Completeness 98.980% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 1/3 | 0.333 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accA | acetyl-CoA carboxylase carboxyltransferase alpha | 1 |
| accD | acetyl-CoA carboxylase carboxyltransferase beta | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| bcd | butyryl-CoA dehydrogenase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| bcdCLK_2597 | ACA55063.1 | OG0000034 | CP000962.1:3485160–3486299 - | butyryl-CoA dehydrogenase [Clostridium botulinum A3 str. Loch Maree] |
| ldhCLK_0997 | ACA55684.1 | OG0000131 | CP000962.1:1759358–1760314 - | L-lactate dehydrogenase [Clostridium botulinum A3 str. Loch Maree] |
| hbdCLK_2599 | ACA56671.1 | OG0000229 | CP000962.1:3487695–3488525 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium botulinum A3 str. Loch Maree] |
| accDCLK_3068 | ACA55450.1 | OG0000403 | CP000962.1:3944875–3945744 - | acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Clostridium botulinum A3 str. Loch Maree] |
| accACLK_3067 | ACA56250.1 | OG0000885 | CP000962.1:3943989–3944828 - | acetyl-CoA carboxylase, carboxyl transferase, alpha subunit [Clostridium botulinum A3 str. Loch Maree] |
| lctPCLK_0445 | ACA54884.1 | OG0001228 | CP000962.1:1160234–1161757 + | L-lactate permease [Clostridium botulinum A3 str. Loch Maree] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.