Assembly
ASM9234v1
BioProject PRJNA47575 · BioSample SAMN02603020
GENOME-RESOLVED EVIDENCE
GCA_000092345.1
Clostridium botulinum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4010614 bp · GC 28.500%
Completeness 91.940% · contamination 0.170%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 1/3 | 0.333 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accA | acetyl-CoA carboxylase carboxyltransferase alpha | 1 |
| accD | acetyl-CoA carboxylase carboxyltransferase beta | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| bcd | butyryl-CoA dehydrogenase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| bcdCBF_3330 | ADG00914.1 | OG0000034 | CP002011.1:3499178–3500317 - | butyryl-CoA dehydrogenase [Clostridium botulinum F str. 230613] |
| ldhCBF_1580 | ADF99308.1 | OG0000131 | CP002011.1:1694110–1695066 - | L-lactate dehydrogenase [Clostridium botulinum F str. 230613] |
| hbdCBF_3332 | ADG00916.1 | OG0000229 | CP002011.1:3501714–3502544 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium botulinum F str. 230613] |
| accDCBF_3786 | ADG01306.1 | OG0000403 | CP002011.1:3945703–3946572 - | acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Clostridium botulinum F str. 230613] |
| accACBF_3785 | ADG01305.1 | OG0000885 | CP002011.1:3944817–3945656 - | acetyl-CoA carboxylase, carboxyl transferase, alpha subunit [Clostridium botulinum F str. 230613] |
| lctPCBF_1057 | ADF98818.1 | OG0001228 | CP002011.1:1130396–1131919 + | L-lactate permease [Clostridium botulinum F str. 230613] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.