Assembly
ASM14462v1
BioProject PRJNA42097 · BioSample SAMN00017134
GENOME-RESOLVED EVIDENCE
GCA_000144625.1
[Clostridium] saccharolyticum WM1 · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4662871 bp · GC 45.000%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 2/3 | 0.667 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 5/8 | 0.625 | Partial/absent |
| lactate_entry_support | 0/2 | 0.000 | Partial/absent |
| reverse_beta_oxidation_core | 0/4 | 0.000 | Partial/absent |
| rnf_complex | 5/6 | 0.833 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accBWP_013270779.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 154.900 / 0.98800 | Annotation: gene_symbol |
| accDWP_013270782.1 · acetyl-CoA carboxylase carboxyl transferase subunit | High | Approved candidatestrong profile and bridge orthogroup support | 442.200 / 0.99000 | Bridge orthogroup OG0000844 |
| adhEWP_013274835.1 · bifunctional acetaldehyde-CoA/alcohol dehydrogenase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 1532.800 / 0.99400 | Bridge orthogroup OG0002334 |
| etfAWP_013274507.1 · electron transfer flavoprotein subunit alpha/FixB family protein | High | Approved candidatestrong profile and bridge orthogroup support | 438.900 / 0.97900 | Bridge orthogroup OG0001385 |
| etfBWP_013273621.1 · electron transfer flavoprotein subunit beta | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 362.700 / 1.00000 | Annotation: gene_symbol |
| etfBWP_013274506.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 340.200 / 0.98500 | Bridge orthogroup OG0001139 |
| fabDWP_013270776.1 · ACP S-malonyltransferase | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 322.500 / 0.96500 | Annotation: gene_symbol |
| fabFWP_013270778.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 573.800 / 0.99300 | Annotation: gene_symbol |
| fabGWP_013270777.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 262.600 / 0.99600 | Bridge orthogroup OG0000008 |
| fabKWP_013270775.1 · enoyl-[acyl-carrier-protein] reductase FabK | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 501.000 / 0.97100 | Annotation: gene_symbol |
| fabZWP_013270780.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 196.700 / 0.76000 | Bridge orthogroup OG0000074 |
| rnfAWP_013272336.1 · electron transport complex subunit RsxA | High | Approved candidatestrong profile and bridge orthogroup support | 273.100 / 0.99500 | Bridge orthogroup OG0001169 |
| rnfBWP_013272337.1 · RnfABCDGE type electron transport complex subunit B | High | Approved candidatestrong profile and bridge orthogroup support | 327.400 / 0.92100 | Bridge orthogroup OG0001404 |
| rnfCWP_013272332.1 · electron transport complex subunit RsxC | High | Approved candidatestrong profile and bridge orthogroup support | 388.100 / 0.74600 | Bridge orthogroup OG0001114 |
| rnfDWP_013272333.1 · RnfABCDGE type electron transport complex subunit D | High | Approved candidatestrong profile and bridge orthogroup support | 328.900 / 0.93800 | Bridge orthogroup OG0001182 |
| rnfEWP_013272335.1 · electron transport complex subunit RsxE | High | Approved candidatestrong profile and bridge orthogroup support | 279.600 / 0.93300 | Bridge orthogroup OG0001153 |
| fabZWP_041708402.1 · double-cubane-cluster-containing anaerobic reductase | Low | Excluded: low confidenceprofile hit lacks strong score and bridge orthogroup support | 50.300 / 0.62300 | Profile only |
| accCWP_013270781.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 738.200 / 0.99100 | Profile only |
| bcdWP_013274497.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 598.700 / 0.99500 | Profile only |
| bcdWP_013273622.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 510.300 / 0.98900 | Profile only |
| crtWP_013274499.1 · enoyl-CoA hydratase/isomerase family protein | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 249.000 / 1.00000 | Annotation: specific_product_name |
| etfAWP_013273620.1 · electron transfer flavoprotein subunit alpha | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 452.600 / 0.97900 | Profile only |
| fabGWP_013271334.1 · elongation factor P 5-aminopentanone reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 234.200 / 0.97600 | Profile only |
| fabGWP_013271834.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 211.100 / 0.98800 | Profile only |
| fabGWP_013273502.1 · gluconate 5-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 210.000 / 0.98400 | Profile only |
| fabGWP_013273319.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 197.200 / 0.97600 | Profile only |
| fabGWP_013271016.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 195.900 / 0.99600 | Profile only |
| fabGWP_013270849.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 192.300 / 0.96000 | Profile only |
| fabGWP_013272904.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 175.800 / 0.98800 | Profile only |
| fabGWP_013273686.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 139.000 / 0.97600 | Profile only |
| fabGWP_013272640.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 99.000 / 0.77400 | Bridge orthogroup OG0000242 |
| fabHWP_041708747.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 312.800 / 0.98800 | Profile only |
| fabLWP_013270777.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 218.000 / 0.97600 | Profile only |
| fabLWP_013271334.1 · elongation factor P 5-aminopentanone reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 200.700 / 0.96400 | Profile only |
| fabLWP_013273319.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 190.500 / 0.99200 | Profile only |
| fabLWP_013271016.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 184.900 / 0.94800 | Profile only |
| fabLWP_013271834.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 183.500 / 0.99200 | Profile only |
| fabLWP_013273502.1 · gluconate 5-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 180.600 / 0.97200 | Profile only |
| fabLWP_013270849.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 176.200 / 0.95600 | Profile only |
| fabLWP_013272904.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 174.300 / 0.98400 | Profile only |
| fabLWP_013273686.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 127.300 / 0.97600 | Profile only |
| ldhWP_013272004.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 435.000 / 0.98100 | Profile only |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.