Assembly
ASM14527v1
BioProject PRJNA32609 · BioSample SAMN00002614
GENOME-RESOLVED EVIDENCE
GCA_000145275.1
Clostridium cellulovorans · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 5262222 bp · GC 31.000%
Completeness 98.760% · contamination 2.070%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 1/3 | 0.333 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| etfA | electron transfer flavoprotein alpha subunit | 1 |
| accA | acetyl-CoA carboxylase carboxyltransferase alpha | 1 |
| accD | acetyl-CoA carboxylase carboxyltransferase beta | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 2 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| etfAClocel_2631 | ADL52335.1 | OG0000082 | CP002160.1:3199506–3200492 - | Electron transfer flavoprotein alpha subunit [Clostridium cellulovorans 743B] |
| ldhClocel_1533 | ADL51281.1 | OG0000131 | CP002160.1:1888165–1889118 + | L-lactate dehydrogenase [Clostridium cellulovorans 743B] |
| ldhClocel_2700 | ADL52400.1 | OG0000131 | CP002160.1:3292289–3293248 - | L-lactate dehydrogenase [Clostridium cellulovorans 743B] |
| thlClocel_0192 | ADL49976.1 | OG0000234 | CP002160.1:274820–275998 + | acetyl-CoA acetyltransferase [Clostridium cellulovorans 743B] |
| thlClocel_3058 | ADL52748.1 | OG0000234 | CP002160.1:3751872–3753056 - | acetyl-CoA acetyltransferase [Clostridium cellulovorans 743B] |
| accDClocel_4135 | ADL53796.1 | OG0000403 | CP002160.1:4993606–4994481 - | acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Clostridium cellulovorans 743B] |
| accAClocel_4134 | ADL53795.1 | OG0000885 | CP002160.1:4992827–4993609 - | acetyl-CoA carboxylase, carboxyl transferase, alpha subunit [Clostridium cellulovorans 743B] |
| crtClocel_2976 | ADL52668.1 | OG0001394 | CP002160.1:3662521–3663303 - | Enoyl-CoA hydratase/isomerase [Clostridium cellulovorans 743B] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.