Assembly
ASM15224v2
BioProject PRJNA52281 · BioSample SAMN02603161
GENOME-RESOLVED EVIDENCE
GCA_000152245.2
Eubacterium callanderi · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4316707 bp · GC 47.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 2/3 | 0.667 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 6/8 | 0.750 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 1/4 | 0.250 | Partial/absent |
| rnf_complex | 6/6 | 1.000 | Complete marker set |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accBWP_013379912.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 139.900 / 0.98800 | Annotation: gene_symbol |
| accCWP_013379913.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 670.800 / 0.99100 | Annotation: gene_symbol |
| accDWP_013379914.1 · acetyl-CoA carboxylase, carboxyltransferase subunit beta | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 383.400 / 0.96600 | Bridge orthogroup OG0000844 |
| crtWP_013378876.1 · enoyl-CoA hydratase-related protein | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 331.600 / 0.97700 | Bridge orthogroup OG0002531 |
| etfAWP_013380256.1 · lactate dehydrogenase subunit LctC | High | Approved candidatestrong profile and bridge orthogroup support | 458.800 / 0.98500 | Bridge orthogroup OG0002903 |
| etfBWP_013380255.1 · lactate dehydrogenase subunit LctB | High | Approved candidatestrong profile and bridge orthogroup support | 331.600 / 1.00000 | Bridge orthogroup OG0002348 |
| etfBWP_013379201.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 231.700 / 0.96900 | Bridge orthogroup OG0002348 |
| fabDWP_013379920.1 · ACP S-malonyltransferase | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 319.400 / 0.97500 | Annotation: gene_symbol |
| fabFWP_013379922.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 569.800 / 0.99300 | Annotation: gene_symbol |
| fabGWP_013379921.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 257.200 / 0.97200 | Bridge orthogroup OG0000008 |
| fabZWP_013379923.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 156.000 / 0.75400 | Bridge orthogroup OG0000074 |
| lctPWP_013380258.1 · L-lactate permease | High | Approved candidatestrong profile and bridge orthogroup support | 766.900 / 0.99400 | Bridge orthogroup OG0000731 |
| rnfAWP_013380941.1 · electron transport complex subunit RsxA | High | Approved candidatestrong profile and bridge orthogroup support | 285.500 / 0.99500 | Bridge orthogroup OG0001169 |
| rnfBWP_013380940.1 · RnfABCDGE type electron transport complex subunit B | High | Approved candidatestrong profile and bridge orthogroup support | 325.600 / 0.93200 | Bridge orthogroup OG0001404 |
| rnfCWP_013380945.1 · electron transport complex subunit RsxC | High | Approved candidatestrong profile and bridge orthogroup support | 394.600 / 0.74600 | Bridge orthogroup OG0001114 |
| rnfDWP_013380944.1 · RnfABCDGE type electron transport complex subunit D | High | Approved candidatestrong profile and bridge orthogroup support | 387.100 / 0.93500 | Bridge orthogroup OG0001182 |
| rnfEWP_013380942.1 · electron transport complex subunit RsxE | High | Approved candidatestrong profile and bridge orthogroup support | 280.500 / 0.96200 | Bridge orthogroup OG0001153 |
| rnfGWP_013380943.1 · RnfABCDGE type electron transport complex subunit G | High | Approved candidatestrong profile and bridge orthogroup support | 183.300 / 0.92300 | Bridge orthogroup OG0001292 |
| accAWP_013379915.1 · acetyl-CoA carboxylase carboxyltransferase subunit alpha | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 374.000 / 0.97100 | Profile only |
| accCWP_013379059.1 · pyruvate carboxylase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 528.000 / 0.98700 | Profile only |
| bcdWP_013378878.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 635.800 / 1.00000 | Profile only |
| bcdWP_041689989.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 625.500 / 0.99200 | Profile only |
| bcdWP_081474191.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 574.600 / 0.99700 | Profile only |
| bcdWP_013382034.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 557.900 / 1.00000 | Profile only |
| crtWP_013382036.1 · enoyl-CoA hydratase-related protein | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 366.600 / 0.98500 | Annotation: specific_product_name |
| etfAWP_013378880.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 449.400 / 0.98800 | Profile only |
| etfAWP_013379202.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 223.400 / 0.94900 | Profile only |
| etfBWP_013378879.1 · electron transfer flavoprotein subunit beta/FixA family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 355.900 / 1.00000 | Profile only |
| etfBWP_013378657.1 · electron transfer flavoprotein subunit beta/FixA family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 285.400 / 0.98100 | Profile only |
| fabGWP_013381166.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 247.400 / 1.00000 | Profile only |
| fabGWP_013378665.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 222.000 / 0.98800 | Profile only |
| fabGWP_013381226.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 202.400 / 0.98800 | Profile only |
| fabGWP_013380138.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 194.300 / 0.96800 | Profile only |
| fabGWP_081474155.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 184.800 / 0.96000 | Bridge orthogroup OG0000008 |
| fabGWP_013380588.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 182.100 / 0.98000 | Profile only |
| fabGWP_013379500.1 · 7alpha-hydroxysteroid dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 175.600 / 0.98400 | Profile only |
| fabGWP_013379478.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 168.600 / 0.98000 | Profile only |
| fabGWP_013382224.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 97.600 / 0.82700 | Bridge orthogroup OG0000242 |
| fabHWP_013379916.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 287.500 / 0.98200 | Profile only |
| fabKWP_013379918.1 · DUF561 domain-containing protein | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 438.600 / 0.96800 | Profile only |
| fabLWP_013378665.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 202.900 / 0.99200 | Profile only |
| fabLWP_013381166.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 194.900 / 0.96800 | Profile only |
| fabLWP_013381226.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 188.500 / 0.98400 | Profile only |
| fabLWP_013380588.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 178.300 / 0.97600 | Profile only |
| fabLWP_013380138.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 167.800 / 0.96400 | Profile only |
| fabLWP_013379500.1 · 7alpha-hydroxysteroid dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 161.800 / 0.98000 | Profile only |
| fabLWP_081474155.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 157.700 / 0.96800 | Profile only |
| fabLWP_013379478.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 154.100 / 0.97600 | Profile only |
| hbdWP_013378877.1 · 3-hydroxyacyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 390.400 / 0.98900 | Profile only |
| rnfCWP_013382320.1 · 4Fe-4S dicluster domain-containing protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 562.300 / 0.99300 | Profile only |
| thlWP_013378875.1 · acetyl-CoA C-acetyltransferase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 606.200 / 0.99200 | Profile only |
| fabLWP_013379921.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | RejectedSpecific CDD hits identify the sequence as FabG/3-oxoacyl-ACP reductase rather than FabL. | 226.600 / 0.97600 | Annotation: CDD_competing_FabG_signature |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.