Assembly
ASM15945v2
BioProject PRJNA30643 · BioSample SAMN00001494
GENOME-RESOLVED EVIDENCE
GCA_000159455.2
Limosilactobacillus reuteri SD2112 · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2316838 bp · GC 39.000%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 5/8 | 0.625 | Partial/absent |
| lactate_entry_support | 0/2 | 0.000 | Partial/absent |
| reverse_beta_oxidation_core | 1/4 | 0.250 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accAWP_003671841.1 · acetyl-CoA carboxylase carboxyltransferase subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 316.000 / 0.95600 | Bridge orthogroup OG0001120 |
| accCWP_003671843.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 657.600 / 0.99100 | Annotation: gene_symbol |
| accDWP_178084818.1 · acetyl-CoA carboxylase, carboxyltransferase subunit beta | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 370.800 / 0.93900 | Bridge orthogroup OG0000844 |
| adhEWP_003670531.1 · bifunctional acetaldehyde-CoA/alcohol dehydrogenase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 1078.400 / 0.99400 | Bridge orthogroup OG0002334 |
| fabFWP_003671846.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 508.700 / 0.98800 | Annotation: gene_symbol |
| fabGWP_003671847.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 225.700 / 0.99200 | Bridge orthogroup OG0000008 |
| fabIWP_003671840.1 · enoyl-ACP reductase FabI | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 341.700 / 0.96500 | Annotation: gene_symbol |
| fabZWP_003671844.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 166.900 / 0.76000 | Bridge orthogroup OG0000074 |
| fabZWP_003671852.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 124.400 / 0.76000 | Bridge orthogroup OG0000074 |
| thlWP_003670258.1 · thiolase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 514.300 / 0.99700 | Bridge orthogroup OG0000010 |
| crtWP_003672083.1 · 1,4-dihydroxy-2-naphthoyl-CoA synthase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 154.400 / 0.98500 | Profile only |
| fabGWP_035160390.1 · (S)-acetoin forming diacetyl reductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 199.300 / 0.97200 | Bridge orthogroup OG0000008 |
| fabGWP_035159987.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 166.600 / 0.87900 | Bridge orthogroup OG0000242 |
| fabHWP_003671850.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 287.700 / 0.98800 | Profile only |
| fabLWP_035160390.1 · (S)-acetoin forming diacetyl reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 191.500 / 0.99200 | Profile only |
| fabLWP_003671847.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 174.900 / 0.97600 | Profile only |
| fabLWP_035159987.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 138.600 / 0.88500 | Profile only |
| ldhWP_035159976.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 391.600 / 0.98700 | Profile only |
| ldhWP_003672108.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 357.000 / 0.97500 | Profile only |
| ldhWP_003670711.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 338.000 / 0.97200 | Profile only |
| ldhWP_003670825.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 334.100 / 0.98100 | Profile only |
| ldhWP_003671337.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 257.600 / 0.96800 | Profile only |
| ldhWP_003670158.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 224.400 / 0.97500 | Profile only |
| accBWP_003671845.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Rejectedredundant entry | 138.300 / 0.99400 | Profile only |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.