GENOME-RESOLVED EVIDENCE

GCA_000193595.3

Bordetella pertussis B1917 · Complete Genome

View versioned NCBI assembly →

Assembly

ASM19359v3

BioProject PRJNA46277 · BioSample SAMN02470863

Quality metadata

Genome size 4102186 bp · GC 67.500%

Completeness —% · contamination —%

Pathway marker completeness

ModuleMarkersFractionCall
bcd_etf_module0/30.000Partial/absent
ethanol_entry_support0/10.000Partial/absent
fatty_acid_biosynthesis_core6/80.750Partial/absent
lactate_entry_support0/20.000Partial/absent
reverse_beta_oxidation_core2/40.500Partial/absent
rnf_complex0/60.000Partial/absent

Detected markers

MarkerFunctionCopies

Profile-HMM marker predictions

Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.

Marker / proteinConfidenceReview statusScore / coverageSupporting evidence
accAWP_003810007.1 · acetyl-CoA carboxylase carboxyltransferase subunit alphaHighApproved candidatestrong profile and bridge orthogroup support346.200 / 0.98900Bridge orthogroup OG0001120
accBWP_003814952.1 · acetyl-CoA carboxylase biotin carboxyl carrier proteinMediumApproved candidatestrong profile plus independent annotation support: gene_symbol133.600 / 0.98100Annotation: gene_symbol
accBWP_004568140.1 · acetyl-CoA carboxylase biotin carboxyl carrier proteinMediumApproved candidatestrong profile plus independent annotation support: gene_symbol107.900 / 0.97500Annotation: gene_symbol
accCWP_010930062.1 · acetyl-CoA carboxylase biotin carboxylase subunitMediumApproved candidatestrong profile plus independent annotation support: gene_symbol597.200 / 0.99100Annotation: gene_symbol
accCWP_003814951.1 · acetyl-CoA carboxylase biotin carboxylase subunitMediumApproved candidatestrong profile plus independent annotation support: gene_symbol577.200 / 0.99600Annotation: gene_symbol
accDWP_003813843.1 · acetyl-CoA carboxylase, carboxyltransferase subunit betaHighApproved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol323.400 / 0.91100Bridge orthogroup OG0000844
coatWP_003813726.1 · CoA transferase subunit BMediumApproved candidatestrong profile plus independent annotation support: specific_product_name215.500 / 0.94000Annotation: specific_product_name
coatWP_003812478.1 · 3-oxoacid CoA-transferase subunit BMediumApproved candidatestrong profile plus independent annotation support: specific_product_name163.600 / 0.93500Annotation: specific_product_name
coatWP_003819086.1 · 3-oxoacid CoA-transferase subunit BMediumApproved candidatestrong profile plus independent annotation support: specific_product_name161.600 / 0.88900Annotation: specific_product_name
fabFWP_003813802.1 · beta-ketoacyl-ACP synthase IIMediumApproved candidatestrong profile plus independent annotation support: gene_symbol633.700 / 0.99000Annotation: gene_symbol
fabGWP_003813819.1 · 3-oxoacyl-ACP reductase FabGHighApproved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol243.200 / 0.98800Bridge orthogroup OG0000008
fabIWP_003814739.1 · enoyl-ACP reductase FabIMediumApproved candidatestrong profile plus independent annotation support: gene_symbol378.500 / 0.97700Annotation: gene_symbol
fabIWP_010930134.1 · enoyl-ACP reductase FabIMediumApproved candidatestrong profile plus independent annotation support: gene_symbol304.100 / 0.96500Annotation: gene_symbol
fabZWP_003811776.1 · 3-hydroxyacyl-ACP dehydratase FabZHighApproved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol122.800 / 0.76000Bridge orthogroup OG0000074
hbdWP_010929692.1 · 3-hydroxyacyl-CoA dehydrogenase family proteinHighApproved candidatestrong profile and bridge orthogroup support284.600 / 0.98600Bridge orthogroup OG0000153
thlWP_010930713.1 · beta-ketothiolase BktBHighApproved candidatestrong profile and bridge orthogroup support479.100 / 0.99000Bridge orthogroup OG0000010
thlWP_010931117.1 · 3-oxoadipyl-CoA thiolaseHighApproved candidatestrong profile and bridge orthogroup support414.700 / 0.98700Bridge orthogroup OG0000010
thlWP_003814674.1 · acetyl-CoA C-acyltransferaseHighApproved candidatestrong profile and bridge orthogroup support404.800 / 0.99000Bridge orthogroup OG0000010
thlWP_010929948.1 · acetyl-CoA C-acyltransferaseHighApproved candidatestrong profile and bridge orthogroup support340.700 / 0.99500Bridge orthogroup OG0000010
fabGWP_010931528.1 · SDR family oxidoreductaseLowExcluded: low confidenceprofile hit lacks strong score and bridge orthogroup support91.800 / 0.78200Profile only
fabGWP_225719709.1 · SDR family NAD(P)-dependent oxidoreductaseLowExcluded: low confidenceprofile hit lacks strong score and bridge orthogroup support90.500 / 0.91500Profile only
fabGWP_010930507.1 · SDR family oxidoreductaseLowExcluded: low confidenceprofile hit lacks strong score and bridge orthogroup support88.400 / 0.93500Profile only
fabGWP_010926447.1 · SDR family oxidoreductaseLowExcluded: low confidenceprofile hit lacks strong score and bridge orthogroup support83.200 / 0.77800Profile only
fabGWP_010930486.1 · SDR family NAD(P)-dependent oxidoreductaseLowExcluded: low confidenceprofile hit lacks strong score and bridge orthogroup support77.100 / 0.75800Profile only
accCWP_010929810.1 · acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alphaMediumNeeds reviewretain confidence tier and orthogroup-support fields during import508.400 / 0.99100Profile only
bcdWP_010931399.1 · acyl-CoA dehydrogenase family proteinMediumNeeds reviewretain confidence tier and orthogroup-support fields during import385.900 / 0.97900Profile only
bcdWP_003811748.1 · acyl-CoA dehydrogenase family proteinMediumNeeds reviewretain confidence tier and orthogroup-support fields during import368.300 / 0.99700Profile only
bcdWP_003808195.1 · acyl-CoA dehydrogenase family proteinMediumNeeds reviewretain confidence tier and orthogroup-support fields during import339.500 / 0.95300Profile only
bcdWP_010929926.1 · acyl-CoA dehydrogenase family proteinMediumNeeds reviewretain confidence tier and orthogroup-support fields during import302.400 / 0.99200Profile only
bcdWP_010929731.1 · acyl-CoA dehydrogenase family proteinMediumNeeds reviewretain confidence tier and orthogroup-support fields during import285.700 / 0.88400Profile only
bcdWP_010930413.1 · acyl-CoA dehydrogenaseMediumNeeds reviewretain confidence tier and orthogroup-support fields during import256.900 / 0.98400Profile only
bcdWP_010929929.1 · acyl-CoA dehydrogenase family proteinMediumNeeds reviewretain confidence tier and orthogroup-support fields during import256.300 / 0.99200Profile only
crtWP_003815367.1 · enoyl-CoA hydrataseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific269.500 / 0.97700Annotation: specific_product_name
crtWP_010929921.1 · enoyl-CoA hydratase/isomerase family proteinMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific241.300 / 0.98800Annotation: specific_product_name
crtWP_010931604.1 · enoyl-CoA hydratase/isomerase family proteinMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific190.200 / 0.98100Annotation: specific_product_name
crtWP_014486103.1 · crotonase/enoyl-CoA hydratase family proteinMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific186.400 / 0.98800Annotation: specific_product_name
crtWP_003817938.1 · enoyl-CoA hydratase/isomerase family proteinMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific177.200 / 0.96900Annotation: specific_product_name
crtWP_010929791.1 · crotonase/enoyl-CoA hydratase family proteinMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific169.200 / 0.93800Annotation: specific_product_name
crtWP_015063637.1 · enoyl-CoA hydratase/isomerase family proteinMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific167.200 / 0.95000Annotation: specific_product_name
crtWP_010929943.1 · enoyl-CoA hydratase/isomerase family proteinMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific166.600 / 0.96500Annotation: specific_product_name
crtWP_003816690.1 · enoyl-CoA hydratase/isomerase family proteinMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific158.100 / 0.96900Annotation: specific_product_name
crtWP_010931073.1 · 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase PaaGMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific157.600 / 1.00000Profile only
crtWP_010930573.1 · enoyl-CoA hydratase/isomerase family proteinMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific154.000 / 0.98100Annotation: specific_product_name
crtWP_010929730.1 · enoyl-CoA hydratase family proteinMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific151.300 / 0.96100Annotation: specific_product_name
crtWP_010930516.1 · enoyl-CoA hydratase/isomerase family proteinMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific149.900 / 0.94200Annotation: specific_product_name
crtWP_010931677.1 · enoyl-CoA hydratase/isomerase family proteinMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific148.900 / 0.84200Annotation: specific_product_name
crtWP_010929582.1 · enoyl-CoA hydratase/isomerase family proteinMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific144.300 / 0.98100Annotation: specific_product_name
crtWP_003817676.1 · enoyl-CoA hydrataseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific143.400 / 0.82600Annotation: specific_product_name
crtWP_014486098.1 · enoyl-CoA hydrataseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific141.700 / 0.96100Annotation: specific_product_name
crtWP_010929949.1 · 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing proteinMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific139.400 / 0.76400Profile only
crtWP_010929865.1 · enoyl-CoA hydratase/isomerase family proteinMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific137.600 / 0.91500Annotation: specific_product_name
crtWP_003815313.1 · enoyl-CoA hydratase-related proteinMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific131.800 / 0.96100Annotation: specific_product_name
crtWP_003819309.1 · enoyl-CoA hydratase-related proteinMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific129.000 / 0.97300Annotation: specific_product_name
crtWP_003815315.1 · enoyl-CoA hydratase/isomerase family proteinMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific128.400 / 0.94200Annotation: specific_product_name
crtWP_014486051.1 · enoyl-CoA hydratase/isomerase family proteinMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific126.400 / 0.84600Annotation: specific_product_name
etfAWP_010930111.1 · electron transfer flavoprotein subunit alpha/FixB family proteinMediumNeeds reviewretain confidence tier and orthogroup-support fields during import229.000 / 0.94300Profile only
fabGWP_003813586.1 · acetoacetyl-CoA reductaseHighNeeds reviewextreme per-proteome copy number; profile alone is not function-specific216.900 / 0.98000Bridge orthogroup OG0000008
fabGWP_010930638.1 · SDR family oxidoreductaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific216.000 / 0.98800Profile only
fabGWP_010930042.1 · SDR family oxidoreductaseHighNeeds reviewextreme per-proteome copy number; profile alone is not function-specific208.100 / 0.97600Bridge orthogroup OG0000008
fabGWP_003820818.1 · glucose 1-dehydrogenaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific198.200 / 0.98800Profile only
fabGWP_010931160.1 · SDR family NAD(P)-dependent oxidoreductaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific196.800 / 0.98400Profile only
fabGWP_010930222.1 · SDR family oxidoreductaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific192.700 / 0.97600Profile only
fabGWP_003818225.1 · SDR family oxidoreductaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific190.500 / 0.97600Profile only
fabGWP_010929821.1 · SDR family oxidoreductaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific186.400 / 0.99200Profile only
fabGWP_010930206.1 · SDR family oxidoreductaseHighNeeds reviewextreme per-proteome copy number; profile alone is not function-specific185.300 / 0.98000Bridge orthogroup OG0000008
fabGWP_010930004.1 · SDR family oxidoreductaseHighNeeds reviewextreme per-proteome copy number; profile alone is not function-specific182.300 / 0.97200Bridge orthogroup OG0000008
fabGWP_003814011.1 · 3-hydroxybutyrate dehydrogenaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific178.400 / 0.98800Profile only
fabGWP_010930995.1 · SDR family oxidoreductaseHighNeeds reviewextreme per-proteome copy number; profile alone is not function-specific174.500 / 0.98400Bridge orthogroup OG0000008
fabGWP_010930564.1 · SDR family NAD(P)-dependent oxidoreductaseHighNeeds reviewextreme per-proteome copy number; profile alone is not function-specific173.300 / 0.98400Bridge orthogroup OG0000008
fabGWP_010930496.1 · SDR family NAD(P)-dependent oxidoreductaseHighNeeds reviewextreme per-proteome copy number; profile alone is not function-specific171.100 / 0.96800Bridge orthogroup OG0000008
fabGWP_019249354.1 · SDR family NAD(P)-dependent oxidoreductaseHighNeeds reviewextreme per-proteome copy number; profile alone is not function-specific166.600 / 0.96800Bridge orthogroup OG0000008
fabGWP_003810494.1 · SDR family oxidoreductaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific164.500 / 0.97200Profile only
fabGWP_019247851.1 · SDR family NAD(P)-dependent oxidoreductaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific162.900 / 0.97600Profile only
fabGWP_010929700.1 · SDR family oxidoreductaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific162.200 / 0.97600Profile only
fabGWP_010927020.1 · SDR family NAD(P)-dependent oxidoreductaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific160.200 / 0.96400Profile only
fabGWP_010926609.1 · SDR family NAD(P)-dependent oxidoreductaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific158.700 / 0.98800Profile only
fabGWP_003816687.1 · SDR family NAD(P)-dependent oxidoreductaseHighNeeds reviewextreme per-proteome copy number; profile alone is not function-specific154.900 / 0.96000Bridge orthogroup OG0000008
fabGWP_010929694.1 · SDR family NAD(P)-dependent oxidoreductaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific154.600 / 0.95600Profile only
fabGWP_003811135.1 · SDR family oxidoreductaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific145.100 / 0.92300Profile only
fabGWP_010931126.1 · 3-hydroxyacyl-CoA dehydrogenaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific140.400 / 0.98800Profile only
fabGWP_003813618.1 · SDR family oxidoreductaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific139.800 / 0.95200Profile only
fabGWP_010931159.1 · SDR family NAD(P)-dependent oxidoreductaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific137.100 / 0.97600Profile only
fabGWP_023995059.1 · SDR family NAD(P)-dependent oxidoreductaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific117.300 / 0.75800Profile only
fabGWP_010931100.1 · SDR family oxidoreductaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific117.100 / 0.97200Profile only
fabGWP_014486095.1 · short-chain dehydrogenase/reductaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific116.200 / 0.98400Profile only
fabGWP_003813987.1 · SDR family oxidoreductaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific106.400 / 0.98000Profile only
fabHWP_010930935.1 · beta-ketoacyl-ACP synthase IIIMediumNeeds reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation288.400 / 0.98800Profile only
fabLWP_003820818.1 · glucose 1-dehydrogenaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific228.500 / 0.98800Profile only
fabLWP_010930222.1 · SDR family oxidoreductaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific226.800 / 0.98000Profile only
fabLWP_003818225.1 · SDR family oxidoreductaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific206.700 / 0.98000Profile only
fabLWP_010930638.1 · SDR family oxidoreductaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific206.000 / 0.98800Profile only
fabLWP_010931160.1 · SDR family NAD(P)-dependent oxidoreductaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific205.500 / 0.98000Profile only
fabLWP_010929821.1 · SDR family oxidoreductaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific202.800 / 0.97200Profile only
fabLWP_003813819.1 · 3-oxoacyl-ACP reductase FabGMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific191.400 / 0.98000Profile only
fabLWP_010929700.1 · SDR family oxidoreductaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific190.700 / 0.97600Profile only
fabLWP_010930042.1 · SDR family oxidoreductaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific183.100 / 0.97600Profile only
fabLWP_010931528.1 · SDR family oxidoreductaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific172.100 / 0.92100Profile only
fabLWP_010926609.1 · SDR family NAD(P)-dependent oxidoreductaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific169.000 / 0.99200Profile only
fabLWP_019247851.1 · SDR family NAD(P)-dependent oxidoreductaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific166.300 / 0.97600Profile only
fabLWP_003814011.1 · 3-hydroxybutyrate dehydrogenaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific165.700 / 0.97600Profile only
fabLWP_010930995.1 · SDR family oxidoreductaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific159.800 / 0.98800Profile only
fabLWP_010930206.1 · SDR family oxidoreductaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific158.000 / 0.98400Profile only
fabLWP_010930004.1 · SDR family oxidoreductaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific156.000 / 0.98000Profile only
fabLWP_010927020.1 · SDR family NAD(P)-dependent oxidoreductaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific152.900 / 0.96400Profile only
fabLWP_003813586.1 · acetoacetyl-CoA reductaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific151.900 / 0.97600Profile only
fabLWP_010930496.1 · SDR family NAD(P)-dependent oxidoreductaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific150.700 / 0.96000Profile only
fabLWP_003810494.1 · SDR family oxidoreductaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific147.500 / 0.97600Profile only
fabLWP_010931159.1 · SDR family NAD(P)-dependent oxidoreductaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific147.000 / 0.98800Profile only
fabLWP_019249354.1 · SDR family NAD(P)-dependent oxidoreductaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific139.600 / 0.95600Profile only
fabLWP_003811135.1 · SDR family oxidoreductaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific139.300 / 0.88500Profile only
fabLWP_010930564.1 · SDR family NAD(P)-dependent oxidoreductaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific133.600 / 0.98400Profile only
fabLWP_003813618.1 · SDR family oxidoreductaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific132.600 / 0.98400Profile only
fabLWP_010931100.1 · SDR family oxidoreductaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific130.500 / 0.98800Profile only
fabLWP_003816687.1 · SDR family NAD(P)-dependent oxidoreductaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific128.500 / 0.96000Profile only
fabLWP_010929694.1 · SDR family NAD(P)-dependent oxidoreductaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific128.400 / 0.96400Profile only
fabLWP_014486095.1 · short-chain dehydrogenase/reductaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific124.000 / 0.98000Profile only
fabLWP_010930507.1 · SDR family oxidoreductaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific121.800 / 0.94000Profile only
fabLWP_003813987.1 · SDR family oxidoreductaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific116.300 / 0.97200Profile only
fabLWP_023995059.1 · SDR family NAD(P)-dependent oxidoreductaseMediumNeeds reviewextreme per-proteome copy number; profile alone is not function-specific112.300 / 0.75800Profile only
hbdWP_010929949.1 · 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing proteinMediumNeeds reviewretain confidence tier and orthogroup-support fields during import212.700 / 0.97500Profile only

Protein-level evidence

GeneProteinOrthogroupCoordinatesAnnotation

These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.