Assembly
ASM20456v1
BioProject PRJNA60407 · BioSample SAMN02603671
GENOME-RESOLVED EVIDENCE
GCA_000204565.1
Clostridium botulinum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3207592 bp · GC 28.000%
Completeness 100.000% · contamination 0.630%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accA | acetyl-CoA carboxylase carboxyltransferase alpha | 1 |
| accD | acetyl-CoA carboxylase carboxyltransferase beta | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 2 |
| thl | acetyl-CoA acetyltransferase/thiolase | 3 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| ldhCbC4_0597 | AEB75277.1 | OG0000131 | CP002410.1:643052–644023 + | L-lactate dehydrogenase [Clostridium botulinum BKT015925] |
| ldhCbC4_1986 | AEB76658.1 | OG0000131 | CP002410.1:2129345–2130307 + | L-lactate dehydrogenase [Clostridium botulinum BKT015925] |
| bhbDCbC4_2217 | AEB76882.1 | OG0000229 | CP002410.1:2411795–2412643 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium botulinum BKT015925] |
| hbdCbC4_2340 | AEB77005.1 | OG0000229 | CP002410.1:2535043–2535888 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium botulinum BKT015925] |
| thlCbC4_1347 | AEB76026.1 | OG0000234 | CP002410.1:1438065–1439228 - | acetyl-CoA acetyltransferase [Clostridium botulinum BKT015925] |
| thlCbC4_2271 | AEB76936.1 | OG0000234 | CP002410.1:2469880–2471070 - | acetyl-CoA acetyltransferase [Clostridium botulinum BKT015925] |
| thlCbC4_2339 | AEB77004.1 | OG0000234 | CP002410.1:2533810–2535003 - | acetyl-CoA acetyltransferase [Clostridium botulinum BKT015925] |
| accDCbC4_0054 | AEB74737.1 | OG0000403 | CP002410.1:49324–50184 + | acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Clostridium botulinum BKT015925] |
| accACbC4_0055 | AEB74738.1 | OG0000885 | CP002410.1:50218–51162 + | acetyl-CoA carboxylase, carboxyl transferase, alpha subunit [Clostridium botulinum BKT015925] |
| lctPCbC4_0794 | AEB75474.1 | OG0001228 | CP002410.1:875592–877115 + | L-lactate permease [Clostridium botulinum BKT015925] |
| crtCbC4_1599 | AEB76276.1 | OG0001394 | CP002410.1:1697780–1698565 - | Enoyl-CoA hydratase/isomerase [Clostridium botulinum BKT015925] |
| crtCbC4_2221 | AEB76886.1 | OG0001394 | CP002410.1:2415739–2416524 - | Enoyl-CoA hydratase/isomerase [Clostridium botulinum BKT015925] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.