Assembly
ASM24487v1
BioProject PRJNA81613 · BioSample SAMN02261430
GENOME-RESOLVED EVIDENCE
GCA_000244875.1
Clostridium sp. · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4613747 bp · GC 37.500%
Completeness 100.000% · contamination 1.860%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 0/8 | 0.000 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 0/4 | 0.000 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 3 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| ldhClo1100_0135 | AEY64426.1 | OG0000131 | CP003259.1:136190–137122 + | L-lactate dehydrogenase [Clostridium sp. BNL1100] |
| ldhClo1100_0726 | AEY64997.1 | OG0000131 | CP003259.1:806658–807608 - | L-lactate dehydrogenase [Clostridium sp. BNL1100] |
| lctPClo1100_2078 | AEY66269.1 | OG0001228 | CP003259.1:2402466–2404061 - | L-lactate permease [Clostridium sp. BNL1100] |
| ldhClo1100_2794 | AEY66952.1 | OG0001572 | CP003259.1:3205928–3206857 + | alpha-hydroxyacid dehydrogenase, FMN-dependent L-lactate dehydrogenase [Clostridium sp. BNL1100] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.