Assembly
ASM24760v1
BioProject PRJNA60713 · BioSample SAMN02603267
GENOME-RESOLVED EVIDENCE
GCA_000247605.1
Acetobacterium woodii DSM 1030 · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4044777 bp · GC 39.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 2/3 | 0.667 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 6/8 | 0.750 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 0/4 | 0.000 | Partial/absent |
| rnf_complex | 5/6 | 0.833 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accAWP_014356290.1 · acetyl-CoA carboxylase carboxyltransferase subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support | 395.300 / 0.96000 | Bridge orthogroup OG0001120 |
| accBWP_014356294.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 134.000 / 0.97500 | Annotation: gene_symbol |
| accCWP_014356292.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 649.400 / 0.99600 | Annotation: gene_symbol |
| accDWP_014356291.1 · acetyl-CoA carboxylase, carboxyltransferase subunit beta | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 381.600 / 0.97300 | Bridge orthogroup OG0000844 |
| adhEWP_014355032.1 · bifunctional acetaldehyde-CoA/alcohol dehydrogenase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 1442.700 / 0.99800 | Bridge orthogroup OG0002334 |
| coatWP_014355486.1 · 3-oxoacid CoA-transferase subunit B | Medium | Approved candidatestrong profile plus independent annotation support: specific_product_name | 263.700 / 0.94500 | Annotation: specific_product_name |
| coatWP_014355485.1 · CoA transferase subunit A | Medium | Approved candidatestrong profile plus independent annotation support: specific_product_name | 90.800 / 0.70000 | Bridge orthogroup OG0000263 |
| etfAWP_014355266.1 · lactate dehydrogenase subunit LctC | High | Approved candidatestrong profile and bridge orthogroup support | 436.400 / 0.96700 | Bridge orthogroup OG0002903 |
| etfBWP_014355265.1 · lactate dehydrogenase subunit LctB | High | Approved candidatestrong profile and bridge orthogroup support | 327.800 / 1.00000 | Bridge orthogroup OG0002348 |
| fabFWP_014356295.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 561.900 / 0.99300 | Annotation: gene_symbol |
| fabGWP_041668671.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 240.600 / 0.99200 | Bridge orthogroup OG0000008 |
| fabZWP_014356293.1 · 3-hydroxyacyl-ACP dehydratase FabZ | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 90.600 / 0.74900 | Bridge orthogroup OG0000074 |
| lctPWP_014355268.1 · L-lactate permease | High | Approved candidatestrong profile and bridge orthogroup support | 783.000 / 0.99000 | Bridge orthogroup OG0000731 |
| rnfAWP_041668780.1 · electron transport complex subunit RsxA | High | Approved candidatestrong profile and bridge orthogroup support | 293.200 / 0.99500 | Bridge orthogroup OG0001169 |
| rnfBWP_014356575.1 · 4Fe-4S binding protein | High | Approved candidatestrong profile and bridge orthogroup support | 292.700 / 0.95000 | Bridge orthogroup OG0001404 |
| rnfCWP_014356580.1 · electron transport complex subunit RsxC | High | Approved candidatestrong profile and bridge orthogroup support | 391.200 / 0.74600 | Bridge orthogroup OG0001114 |
| rnfCWP_014355323.1 · electron transport complex subunit RsxC | High | Approved candidatestrong profile and bridge orthogroup support | 342.200 / 0.73700 | Bridge orthogroup OG0001114 |
| rnfDWP_014356579.1 · RnfABCDGE type electron transport complex subunit D | High | Approved candidatestrong profile and bridge orthogroup support | 381.100 / 0.95000 | Bridge orthogroup OG0001182 |
| rnfEWP_014356577.1 · electron transport complex subunit RsxE | High | Approved candidatestrong profile and bridge orthogroup support | 271.500 / 0.92300 | Bridge orthogroup OG0001153 |
| accCWP_041671465.1 · pyruvate carboxylase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 514.300 / 0.98700 | Profile only |
| bcdWP_014355957.1 · caffeyl-CoA reductase-Etf complex subunit CarC | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 511.900 / 0.98700 | Profile only |
| etfAWP_014355959.1 · caffeyl-CoA reductase-Etf complex subunit CarE | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 454.800 / 0.97900 | Profile only |
| etfBWP_014355958.1 · caffeyl-CoA reductase-Etf complex subunit CarD | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 353.900 / 1.00000 | Profile only |
| fabGWP_014356154.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 252.000 / 1.00000 | Profile only |
| fabGWP_014356708.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 237.200 / 0.99200 | Profile only |
| fabGWP_014357483.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 229.400 / 0.99200 | Profile only |
| fabGWP_014356673.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 228.600 / 0.98000 | Profile only |
| fabGWP_014356710.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 203.200 / 0.98800 | Profile only |
| fabGWP_041668573.1 · glucose 1-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 199.000 / 0.99600 | Profile only |
| fabGWP_014355627.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 192.900 / 0.99200 | Profile only |
| fabGWP_014356219.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 185.400 / 0.98400 | Profile only |
| fabGWP_014355718.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 150.300 / 0.97200 | Profile only |
| fabHWP_014356300.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 255.300 / 0.98800 | Profile only |
| fabKWP_014356298.1 · nitronate monooxygenase | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 464.500 / 0.99400 | Profile only |
| fabLWP_014357483.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 195.000 / 0.98400 | Profile only |
| fabLWP_014355627.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 192.000 / 0.98400 | Profile only |
| fabLWP_041668573.1 · glucose 1-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 191.100 / 0.97200 | Profile only |
| fabLWP_014356154.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 190.700 / 0.96800 | Profile only |
| fabLWP_014356673.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 185.400 / 0.98000 | Profile only |
| fabLWP_014356708.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 184.000 / 0.97600 | Profile only |
| fabLWP_014356710.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 173.100 / 0.98000 | Profile only |
| fabLWP_014356219.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 160.000 / 0.98400 | Profile only |
| fabLWP_014355718.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 141.000 / 0.97200 | Profile only |
| rnfCWP_014356933.1 · 4Fe-4S dicluster domain-containing protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 545.000 / 0.99100 | Profile only |
| fabLWP_041668671.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | RejectedSpecific CDD hits identify the sequence as FabG/3-oxoacyl-ACP reductase rather than FabL. | 198.200 / 0.97600 | Annotation: CDD_competing_FabG_signature |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.