Assembly
ASM24809v3
BioProject PRJNA80653 · BioSample SAMN02470226
GENOME-RESOLVED EVIDENCE
GCA_000248095.3
Limosilactobacillus mucosae LM1 · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2434610 bp · GC 46.000%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 6/8 | 0.750 | Partial/absent |
| lactate_entry_support | 0/2 | 0.000 | Partial/absent |
| reverse_beta_oxidation_core | 1/4 | 0.250 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accAWP_006500445.1 · acetyl-CoA carboxylase carboxyltransferase subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 318.300 / 0.95200 | Bridge orthogroup OG0001120 |
| accBWP_006500449.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidateverified from NCBI entries and literature | 122.000 / 0.98800 | Profile only |
| accBWP_225364244.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidateverified from NCBI entries and literature | 114.500 / 0.98800 | Profile only |
| accCWP_006500447.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 647.800 / 0.99300 | Annotation: gene_symbol |
| accDWP_006500446.1 · acetyl-CoA carboxylase carboxyltransferase subunit beta | High | Approved candidatestrong profile and bridge orthogroup support | 353.300 / 0.94500 | Bridge orthogroup OG0000844 |
| adhEWP_006500481.1 · bifunctional acetaldehyde-CoA/alcohol dehydrogenase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 1075.200 / 0.99200 | Bridge orthogroup OG0002334 |
| fabFWP_039945970.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 519.800 / 0.98800 | Annotation: gene_symbol |
| fabGWP_006500451.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 220.500 / 0.99200 | Bridge orthogroup OG0000008 |
| fabIWP_006500444.1 · enoyl-ACP reductase FabI | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 341.400 / 0.96900 | Annotation: gene_symbol |
| fabZWP_006500448.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 169.000 / 0.76000 | Bridge orthogroup OG0000074 |
| fabZWP_034541313.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 137.500 / 0.76500 | Bridge orthogroup OG0000074 |
| thlWP_006499927.1 · thiolase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 526.100 / 0.99700 | Bridge orthogroup OG0000010 |
| accCWP_033935079.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 537.700 / 0.98700 | Profile only |
| accCWP_006500443.1 · pyruvate carboxylase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 529.500 / 0.98400 | Profile only |
| fabGWP_109588286.1 · (S)-acetoin forming diacetyl reductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 200.900 / 0.97200 | Bridge orthogroup OG0000008 |
| fabGWP_006501004.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 187.600 / 0.98000 | Bridge orthogroup OG0000008 |
| fabGWP_006499164.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 186.200 / 0.98800 | Profile only |
| fabGWP_006500560.1 · acetoin reductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 177.300 / 0.96800 | Bridge orthogroup OG0000008 |
| fabGWP_006499116.1 · 7alpha-hydroxysteroid dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 172.200 / 0.98400 | Profile only |
| fabGWP_045025450.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 164.300 / 0.89100 | Bridge orthogroup OG0000242 |
| fabHWP_006500454.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 267.700 / 0.98500 | Profile only |
| fabLWP_109588286.1 · (S)-acetoin forming diacetyl reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 191.800 / 0.97200 | Profile only |
| fabLWP_006499164.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 186.600 / 0.98000 | Profile only |
| fabLWP_006500451.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 184.900 / 0.97600 | Profile only |
| fabLWP_006500560.1 · acetoin reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 163.200 / 0.99200 | Profile only |
| fabLWP_006499116.1 · 7alpha-hydroxysteroid dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 155.300 / 0.98400 | Profile only |
| fabLWP_045025450.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 138.500 / 0.89700 | Profile only |
| fabLWP_006501004.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 138.400 / 0.97600 | Profile only |
| ldhWP_006499820.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 363.200 / 0.98400 | Profile only |
| ldhWP_006500686.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 312.500 / 0.97500 | Profile only |
| ldhWP_006500746.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 263.300 / 0.97500 | Profile only |
| ldhWP_006500413.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 242.500 / 0.96500 | Profile only |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.