GENOME-RESOLVED EVIDENCE

GCA_000270305.1

Clostridium sp. · Complete Genome

View versioned NCBI assembly →

Assembly

ASM27030v1

BioProject PRJDA67799 · BioSample SAMD00060994

Quality metadata

Genome size 2835737 bp · GC 50.500%

Completeness 92.650% · contamination 0.750%

Pathway marker completeness

Module	Markers	Fraction	Call
bcd_etf_module	0/3	0.000	Partial/absent
ethanol_entry_support	0/1	0.000	Partial/absent
fatty_acid_biosynthesis_core	0/8	0.000	Partial/absent
lactate_entry_support	2/2	1.000	Complete marker set
reverse_beta_oxidation_core	1/4	0.250	Partial/absent
rnf_complex	0/6	0.000	Partial/absent

Detected markers

Marker	Function	Copies
lctP	L-lactate permease	1
ldh	L-lactate dehydrogenase	1
thl	acetyl-CoA acetyltransferase/thiolase	4

Profile-HMM marker predictions

Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.

Marker / protein	Confidence	Review status	Score / coverage	Supporting evidence
No profile-HMM predictions for this assembly.

Protein-level evidence

Gene	Protein	Orthogroup	Coordinates	Annotation
PaaJCXIVA_06960	BAK46663.1	OG0000234	AP012212.1:742205–743371 -	acetyl-CoA acetyltransferase [Clostridium sp. SY8519]
PaaJCXIVA_10650	BAK47032.1	OG0000234	AP012212.1:1139651–1140826 -	acetyl-CoA acetyltransferase [Clostridium sp. SY8519]
PaaJCXIVA_14550	BAK47421.1	OG0000234	AP012212.1:1568758–1569936 +	acetyl-CoA acetyltransferase [Clostridium sp. SY8519]
LldPCXIVA_17320	BAK47698.1	OG0001228	AP012212.1:1875098–1876675 -	L-lactate permease [Clostridium sp. SY8519]
LldDCXIVA_13840	BAK47350.1	OG0001572	AP012212.1:1491401–1492357 +	L-lactate dehydrogenase [Clostridium sp. SY8519]
PaaJCXIVA_00940	BAK46061.1	OG0016194	AP012212.1:85117–86412 -	acetyl-CoA acetyltransferase [Clostridium sp. SY8519]

These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.