Assembly
ASM36416v2
BioProject PRJNA175999 · BioSample SAMN01731003
GENOME-RESOLVED EVIDENCE
GCA_000364165.2
Clostridium sp. MD294 · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2924599 bp · GC 31.000%
Completeness 96.890% · contamination 1.860%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 0/8 | 0.000 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 1/4 | 0.250 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| lldRC820_000702 | USF29317.1 | OG0000074 | CP097810.1:724536–725270 - | Putative L-lactate dehydrogenase operon regulatory protein [Clostridium sp. MD294] |
| crtC820_002514 | USF31068.1 | OG0001639 | CP097810.1:2561728–2562522 - | Short-chain-enoyl-CoA hydratase [Clostridium sp. MD294] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.