Assembly
ASM38963v1
BioProject PRJNA80 · BioSample SAMN02602952
GENOME-RESOLVED EVIDENCE
GCA_000389635.1
Clostridium pasteurianum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 5044100 bp · GC 30.500%
Completeness 96.740% · contamination 1.190%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accA | acetyl-CoA carboxylase carboxyltransferase alpha | 1 |
| accD | acetyl-CoA carboxylase carboxyltransferase beta | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 3 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| ldhClopa_2980 | AGK97811.1 | OG0000131 | CP003261.1:2948590–2949555 + | L-lactate dehydrogenase [Clostridium pasteurianum BC1] |
| ldhClopa_4803 | AGK99486.1 | OG0000131 | CP003261.1:4885221–4886183 + | L-lactate dehydrogenase [Clostridium pasteurianum BC1] |
| thlClopa_2102 | AGK96984.1 | OG0000234 | CP003261.1:2112422–2113600 + | acetyl-CoA acetyltransferase [Clostridium pasteurianum BC1] |
| thlClopa_3269 | AGK98074.1 | OG0000234 | CP003261.1:3258007–3259185 - | acetyl-CoA acetyltransferase [Clostridium pasteurianum BC1] |
| thlClopa_4387 | AGK99099.1 | OG0000234 | CP003261.1:4450875–4452053 - | acetyl-CoA acetyltransferase [Clostridium pasteurianum BC1] |
| accDClopa_4805 | AGK99488.1 | OG0000403 | CP003261.1:4887231–4888094 - | acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Clostridium pasteurianum BC1] |
| accAClopa_4804 | AGK99487.1 | OG0000885 | CP003261.1:4886394–4887212 - | acetyl-CoA carboxylase, carboxyl transferase, alpha subunit [Clostridium pasteurianum BC1] |
| crtClopa_1419 | AGK96394.1 | OG0001394 | CP003261.1:1479419–1480207 + | enoyl-CoA hydratase/carnithine racemase [Clostridium pasteurianum BC1] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.