Assembly
ASM43927v1
BioProject PRJNA211728 · BioSample SAMN02604178
GENOME-RESOLVED EVIDENCE
GCA_000439275.1
Limosilactobacillus reuteri TD1 · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2145445 bp · GC 39.000%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 0/2 | 0.000 | Partial/absent |
| reverse_beta_oxidation_core | 1/4 | 0.250 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accAWP_019252802.1 · acetyl-CoA carboxylase carboxyltransferase subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 316.900 / 0.95600 | Bridge orthogroup OG0001120 |
| accDWP_186365112.1 · acetyl-CoA carboxylase, carboxyltransferase subunit beta | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 356.900 / 0.93900 | Bridge orthogroup OG0000844 |
| adhEWP_003667367.1 · bifunctional acetaldehyde-CoA/alcohol dehydrogenase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 1080.000 / 0.99300 | Bridge orthogroup OG0002334 |
| fabIWP_019252801.1 · enoyl-ACP reductase FabI | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 343.600 / 0.96500 | Annotation: gene_symbol |
| fabZWP_042229542.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 150.800 / 0.75400 | Bridge orthogroup OG0000074 |
| thlWP_020842839.1 · thiolase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 512.100 / 0.99700 | Bridge orthogroup OG0000010 |
| accCWP_019252804.1 · ATP-binding protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 445.400 / 0.72800 | Profile only |
| crtWP_019253390.1 · 1,4-dihydroxy-2-naphthoyl-CoA synthase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 155.400 / 0.98500 | Profile only |
| fabGWP_029507449.1 · (S)-acetoin forming diacetyl reductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 199.400 / 0.97200 | Bridge orthogroup OG0000008 |
| fabGWP_020843357.1 · glucose 1-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 187.900 / 0.99200 | Profile only |
| fabGWP_019252836.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 181.700 / 0.96000 | Profile only |
| fabGWP_029507544.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 167.300 / 0.87900 | Bridge orthogroup OG0000242 |
| fabLWP_029507449.1 · (S)-acetoin forming diacetyl reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 193.700 / 0.99200 | Profile only |
| fabLWP_020843357.1 · glucose 1-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 168.400 / 0.99200 | Profile only |
| fabLWP_019252836.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 156.400 / 0.96800 | Profile only |
| fabLWP_029507544.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 139.800 / 0.88900 | Profile only |
| ldhWP_019254147.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 391.100 / 0.98700 | Profile only |
| ldhWP_019253599.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 373.400 / 0.97500 | Profile only |
| ldhWP_020843291.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 343.600 / 0.97800 | Profile only |
| ldhWP_019252916.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 334.100 / 0.98100 | Profile only |
| ldhWP_019254251.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 257.800 / 0.96800 | Profile only |
| ldhWP_003669420.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 224.300 / 0.97500 | Profile only |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.