Assembly
SOV
BioProject PRJNA205246 · BioSample SAMN02469826
GENOME-RESOLVED EVIDENCE
GCA_000445445.2
Sporomusa ovata DSM 2662 · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 5433971 bp · GC 43.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 2/3 | 0.667 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 5/8 | 0.625 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 0/4 | 0.000 | Partial/absent |
| rnf_complex | 6/6 | 1.000 | Complete marker set |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accBWP_021169707.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 133.600 / 0.97500 | Annotation: gene_symbol |
| accCWP_021169706.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 689.800 / 0.99100 | Annotation: gene_symbol |
| etfAWP_021170280.1 · FAD-binding protein | High | Approved candidatestrong profile and bridge orthogroup support | 446.100 / 0.98800 | Bridge orthogroup OG0001385 |
| etfAWP_021168924.1 · electron transfer flavoprotein subunit alpha/FixB family protein | High | Approved candidatestrong profile and bridge orthogroup support | 439.400 / 0.96400 | Bridge orthogroup OG0002903 |
| etfBWP_021170279.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 382.400 / 1.00000 | Bridge orthogroup OG0001139 |
| etfBWP_021168923.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 372.700 / 1.00000 | Bridge orthogroup OG0002348 |
| fabDWP_021167511.1 · ACP S-malonyltransferase | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 387.900 / 0.98700 | Annotation: gene_symbol |
| fabFWP_021167515.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 654.200 / 0.99300 | Annotation: gene_symbol |
| fabGWP_021167512.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 277.000 / 0.99600 | Bridge orthogroup OG0000008 |
| fabKWP_021167510.1 · enoyl-[acyl-carrier-protein] reductase FabK | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 476.200 / 0.99000 | Annotation: gene_symbol |
| fabZWP_021169314.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 163.300 / 0.76500 | Bridge orthogroup OG0000074 |
| lctPWP_021169477.1 · L-lactate permease | High | Approved candidatestrong profile and bridge orthogroup support | 441.000 / 0.98400 | Bridge orthogroup OG0000731 |
| lctPWP_028972165.1 · L-lactate permease | High | Approved candidatestrong profile and bridge orthogroup support | 435.800 / 0.98800 | Bridge orthogroup OG0000731 |
| lctPWP_021167015.1 · L-lactate permease | High | Approved candidatestrong profile and bridge orthogroup support | 398.000 / 0.99000 | Bridge orthogroup OG0000731 |
| rnfAWP_021167227.1 · electron transport complex protein RnfA | High | Approved candidatestrong profile and bridge orthogroup support | 261.400 / 1.00000 | Bridge orthogroup OG0001169 |
| rnfBWP_021167228.1 · RnfABCDGE type electron transport complex subunit B | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 340.100 / 0.92100 | Bridge orthogroup OG0001404 |
| rnfCWP_021167223.1 · electron transport complex subunit RsxC | High | Approved candidatestrong profile and bridge orthogroup support | 423.400 / 0.75700 | Bridge orthogroup OG0001114 |
| rnfDWP_021167224.1 · RnfABCDGE type electron transport complex subunit D | High | Approved candidatestrong profile and bridge orthogroup support | 489.700 / 0.95600 | Bridge orthogroup OG0001182 |
| rnfEWP_021167226.1 · electron transport complex subunit RsxE | High | Approved candidatestrong profile and bridge orthogroup support | 268.400 / 0.95700 | Bridge orthogroup OG0001153 |
| rnfGWP_021167225.1 · RnfABCDGE type electron transport complex subunit G | High | Approved candidatestrong profile and bridge orthogroup support | 199.000 / 0.91200 | Bridge orthogroup OG0001292 |
| accBWP_021167220.1 · biotin/lipoyl-containing protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 69.400 / 0.50600 | Bridge orthogroup OG0000034 |
| accCWP_021168530.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 577.000 / 0.99300 | Profile only |
| accCWP_021166868.1 · biotin carboxylase N-terminal domain-containing protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 529.400 / 0.98400 | Profile only |
| bcdWP_021169961.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 490.000 / 0.99700 | Profile only |
| fabGWP_021170310.1 · acetoin reductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 224.000 / 0.97200 | Bridge orthogroup OG0000008 |
| fabGWP_021170765.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 198.700 / 0.98800 | Profile only |
| fabGWP_021169740.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 179.600 / 0.98800 | Profile only |
| fabGWP_021171329.1 · oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 148.400 / 0.76600 | Bridge orthogroup OG0000242 |
| fabHWP_021167509.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 342.700 / 0.98800 | Profile only |
| fabHWP_021169998.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 328.900 / 0.99100 | Profile only |
| fabKWP_021167514.1 · NAD(P)H-dependent flavin oxidoreductase | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 250.000 / 0.93300 | Profile only |
| fabLWP_021170310.1 · acetoin reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 206.400 / 0.96000 | Profile only |
| fabLWP_021169740.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 178.000 / 0.97200 | Profile only |
| fabLWP_021170765.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 173.400 / 0.98000 | Profile only |
| fabLWP_021171329.1 · oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 123.900 / 0.77800 | Profile only |
| fabLWP_021167512.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | RejectedSpecific CDD hits identify the sequence as FabG/3-oxoacyl-ACP reductase rather than FabL. | 223.600 / 0.97200 | Annotation: CDD_competing_FabG_signature |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.