Assembly
ASM48450v2
BioProject PRJNA219420 · BioSample SAMN02358571
GENOME-RESOLVED EVIDENCE
GCA_000484505.2
Clostridium autoethanogenum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4357704 bp · GC 31.000%
Completeness 97.370% · contamination 1.860%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 1/4 | 0.250 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 2 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 2 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCCAETHG_2042 | AGY76261.1 | OG0000061 | CP006763.1:2185469–2186812 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium autoethanogenum DSM 10061] |
| accBCAETHG_0132 | AGY74367.1 | OG0000212 | CP006763.1:142406–142624 + | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium autoethanogenum DSM 10061] |
| accBCAETHG_2044 | AGY76263.1 | OG0000212 | CP006763.1:2187315–2187827 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium autoethanogenum DSM 10061] |
| thlCAETHG_0427 | AGY74656.1 | OG0000234 | CP006763.1:465786–466985 - | acetyl-CoA acetyltransferase [Clostridium autoethanogenum DSM 10061] |
| fabZCAETHG_2043 | AGY76262.1 | OG0000785 | CP006763.1:2186837–2187292 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium autoethanogenum DSM 10061] |
| adhECAETHG_3747 | AGY77948.1 | OG0001124 | CP006763.1:4030507–4033119 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium autoethanogenum DSM 10061] |
| adhECAETHG_3748 | AGY77949.1 | OG0001124 | CP006763.1:4033271–4035904 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium autoethanogenum DSM 10061] |
| lctPCAETHG_0248 | AGY74481.1 | OG0001228 | CP006763.1:267601–269127 - | L-lactate permease [Clostridium autoethanogenum DSM 10061] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.