Assembly
ASM50678v4
BioProject PRJNA229510 · BioSample SAMN02427303
GENOME-RESOLVED EVIDENCE
GCA_000506785.4
Clostridium beijerinckii · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 6186993 bp · GC 30.000%
Completeness 93.110% · contamination 7.470%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 1/3 | 0.333 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| etfB | electron transfer flavoprotein beta subunit | 1 |
| rnfC | Rnf complex subunit C | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabG | 3-oxoacyl-ACP reductase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 4 |
| crt | crotonase/enoyl-CoA hydratase | 6 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 2 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| rnfCX276_05625 | ALB44794.1 | OG0000037 | CP011966.3:4791304–4792629 - | electron transport complex protein RnfC [Clostridium beijerinckii NRRL B-598] |
| accCX276_12755 | ALB46050.1 | OG0000061 | CP011966.3:3171868–3173211 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium beijerinckii NRRL B-598] |
| ldhX276_01065 | ALB43965.1 | OG0000131 | CP011966.3:5944461–5945408 - | L-lactate dehydrogenase [Clostridium beijerinckii NRRL B-598] |
| ldhX276_05485 | ALB44769.1 | OG0000131 | CP011966.3:4819304–4820254 - | L-lactate dehydrogenase [Clostridium beijerinckii NRRL B-598] |
| ldhX276_12560 | ALB46013.1 | OG0000131 | CP011966.3:3215345–3216298 - | L-lactate dehydrogenase [Clostridium beijerinckii NRRL B-598] |
| ldhX276_21775 | ALB47703.1 | OG0000131 | CP011966.3:1126044–1126994 + | L-lactate dehydrogenase [Clostridium beijerinckii NRRL B-598] |
| hbdX276_25200 | ALB48324.1 | OG0000229 | CP011966.3:339029–339877 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium beijerinckii NRRL B-598] |
| thlX276_08025 | ALB45222.1 | OG0000234 | CP011966.3:4233194–4234372 - | acetyl-CoA C-acetyltransferase [Clostridium beijerinckii NRRL B-598] |
| thlX276_24605 | ALB48230.1 | OG0000234 | CP011966.3:452853–454034 + | acetyl-CoA C-acetyltransferase [Clostridium beijerinckii NRRL B-598] |
| adhEX276_25300 | ALB48344.1 | OG0001124 | CP011966.3:311442–314036 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium beijerinckii NRRL B-598] |
| lctPX276_11990 | ALB45925.1 | OG0001228 | CP011966.3:3369123–3370658 - | L-lactate permease [Clostridium beijerinckii NRRL B-598] |
| crtX276_16680 | ALB46759.1 | OG0001394 | CP011966.3:2260962–2261747 + | short-chain-enoyl-CoA hydratase [Clostridium beijerinckii NRRL B-598] |
| crtX276_25220 | ALB48328.1 | OG0001394 | CP011966.3:335005–335790 + | short-chain-enoyl-CoA hydratase [Clostridium beijerinckii NRRL B-598] |
| etfBX276_11980 | ALB45923.1 | OG0004576 | CP011966.3:3371917–3372702 - | electron transfer flavoprotein beta subunit/FixA family protein [Clostridium beijerinckii NRRL B-598] |
| fabGX276_15185 | ALB46493.1 | OG0004652 | CP011966.3:2606185–2606928 + | 3-oxoacyl-ACP reductase FabG [Clostridium beijerinckii NRRL B-598] |
| crtX276_15605 | ALB46561.1 | OG0008680 | CP011966.3:2517290–2518126 + | enoyl-CoA hydratase/isomerase family protein [Clostridium beijerinckii NRRL B-598] |
| crtX276_15610 | ALB46562.1 | OG0008680 | CP011966.3:2516317–2517147 + | enoyl-CoA hydratase/isomerase family protein [Clostridium beijerinckii NRRL B-598] |
| echX276_10390 | ALB45649.1 | OG0020282 | CP011966.3:3757733–3758482 - | enoyl-CoA hydratase [Clostridium beijerinckii NRRL B-598] |
| echX276_10375 | ALB48693.1 | OG0020293 | CP011966.3:3760073–3760837 - | enoyl-CoA hydratase/isomerase [Clostridium beijerinckii NRRL B-598] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.