Assembly
M2/40
BioProject PRJEB4995 · BioSample SAMEA3138942
GENOME-RESOLVED EVIDENCE
GCA_000577895.1
Clostridium bornimense · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3617025 bp · GC 29.500%
Completeness 98.760% · contamination 2.740%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 0/8 | 0.000 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| ldh1CM240_1552 | CDM68710.1 | OG0000131 | HG917868.1:1703591–1704550 + | L-lactate dehydrogenase 1 [Clostridium bornimense] |
| hbdCM240_1174 | CDM68338.1 | OG0000229 | HG917868.1:1311360–1312208 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium bornimense] |
| thlACM240_2289 | CDM69426.1 | OG0000234 | HG917868.1:2498836–2500017 - | Acetyl-CoA acetyltransferase [Clostridium bornimense] |
| lctPCM240_1746 | CDM68904.1 | OG0001228 | HG917868.1:1908889–1910436 - | L-lactate permease [Clostridium bornimense] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.