Assembly
ASM76774v1
BioProject PRJNA207367 · BioSample SAMN03120854
GENOME-RESOLVED EVIDENCE
GCA_000767745.1
Clostridium beijerinckii · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 5999050 bp · GC 30.000%
Completeness 97.260% · contamination 2.680%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 1/8 | 0.125 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accD | acetyl-CoA carboxylase carboxyltransferase beta | 1 |
| ldh | L-lactate dehydrogenase | 4 |
| crt | crotonase/enoyl-CoA hydratase | 3 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 2 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| ldhCbs_1014 | AIU04381.1 | OG0000131 | CP006777.1:1215786–1216736 + | L-lactate dehydrogenase [Clostridium beijerinckii ATCC 35702] |
| ldhCbs_2789 | AIU04382.1 | OG0000131 | CP006777.1:3242267–3243220 - | L-lactate dehydrogenase [Clostridium beijerinckii ATCC 35702] |
| ldhCbs_4072 | AIU04380.1 | OG0000131 | CP006777.1:4676258–4677208 - | L-lactate dehydrogenase [Clostridium beijerinckii ATCC 35702] |
| ldhCbs_4903 | AIU04379.1 | OG0000131 | CP006777.1:5744271–5745218 - | L-lactate dehydrogenase [Clostridium beijerinckii ATCC 35702] |
| hbdCbs_0325 | AIU00638.1 | OG0000229 | CP006777.1:391440–392288 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium beijerinckii ATCC 35702] |
| thlCbs_0411 | AIU00622.1 | OG0000234 | CP006777.1:499121–500302 + | acetyl-CoA acetyltransferase [Clostridium beijerinckii ATCC 35702] |
| thlCbs_3630 | AIU00623.1 | OG0000234 | CP006777.1:4178923–4180101 - | acetyl-CoA acetyltransferase [Clostridium beijerinckii ATCC 35702] |
| accDCbs_1076 | AIU04115.1 | OG0000403 | CP006777.1:1288645–1289508 + | acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Clostridium beijerinckii ATCC 35702] |
| adhECbs_0305 | AIU02688.1 | OG0001124 | CP006777.1:363882–366476 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium beijerinckii ATCC 35702] |
| crtCbs_4544 | AIU02192.1 | OG0001639 | CP006777.1:5259651–5260427 - | enoyl-CoA hydratase/isomerase [Clostridium beijerinckii ATCC 35702] |
| crtCbs_2230 | AIU02194.1 | OG0008680 | CP006777.1:2595388–2596218 + | enoyl-CoA hydratase/isomerase [Clostridium beijerinckii ATCC 35702] |
| crtCbs_2231 | AIU02193.1 | OG0008680 | CP006777.1:2596361–2597197 + | enoyl-CoA hydratase/isomerase [Clostridium beijerinckii ATCC 35702] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.