Assembly
ASM78935v1
BioProject PRJNA225787 · BioSample SAMN03222822
GENOME-RESOLVED EVIDENCE
GCA_000789355.1
Clostridium botulinum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3914604 bp · GC 27.500%
Completeness 98.790% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accA | acetyl-CoA carboxylase carboxyltransferase alpha | 1 |
| accD | acetyl-CoA carboxylase carboxyltransferase beta | 1 |
| lctP | L-lactate permease | 3 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| ldhU728_1473 | AIY78670.1 | OG0000131 | CP006903.1:1471891–1472841 - | L-lactate dehydrogenase [Clostridium botulinum 202F] |
| ldhU728_2426 | AIY79710.1 | OG0000131 | CP006903.1:2508581–2509528 - | L-lactate dehydrogenase [Clostridium botulinum 202F] |
| thlAU728_2989 | AIY80180.1 | OG0000234 | CP006903.1:3075634–3076815 + | acetyl-CoA acetyltransferase [Clostridium botulinum 202F] |
| accDU728_3597 | AIY80819.1 | OG0000403 | CP006903.1:3733361–3734236 + | acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Clostridium botulinum 202F] |
| accAU728_3598 | AIY81404.1 | OG0000885 | CP006903.1:3734229–3735053 + | acetyl-CoA carboxylase, carboxyl transferase, alpha subunit [Clostridium botulinum 202F] |
| lctPU728_2841 | AIY81203.1 | OG0001228 | CP006903.1:2936627–2938150 + | transporter, lactate permease family protein [Clostridium botulinum 202F] |
| lctPU728_51 | AIY79118.1 | OG0001228 | CP006903.1:52564–53175 + | L-lactate permease family protein [Clostridium botulinum 202F] |
| lctPU728_52 | AIY80688.1 | OG0001228 | CP006903.1:53156–54109 + | L-lactate permease family protein [Clostridium botulinum 202F] |
| crtU728_2852 | AIY79661.1 | OG0001394 | CP006903.1:2950759–2951541 + | enoyl-CoA hydratase/isomerase family protein [Clostridium botulinum 202F] |
| crtU728_636 | AIY81584.1 | OG0001639 | CP006903.1:715157–715933 - | enoyl-CoA hydratase/isomerase family protein [Clostridium botulinum 202F] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.