Assembly
ASM78939v1
BioProject PRJNA225788 · BioSample SAMN03222823
GENOME-RESOLVED EVIDENCE
GCA_000789395.1
Clostridium baratii · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3338630 bp · GC 28.500%
Completeness 98.760% · contamination 3.110%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accA | acetyl-CoA carboxylase carboxyltransferase alpha | 1 |
| accD | acetyl-CoA carboxylase carboxyltransferase beta | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| ldhU729_2036 | AIY82888.1 | OG0000131 | CP006905.1:2134295–2135245 + | L-lactate dehydrogenase [Clostridium baratii str. Sullivan] |
| ldhU729_878 | AIY82307.1 | OG0000131 | CP006905.1:958984–959934 - | L-lactate dehydrogenase [Clostridium baratii str. Sullivan] |
| thlAU729_1621 | AIY82480.1 | OG0000234 | CP006905.1:1713963–1715141 + | acetyl-CoA acetyltransferase [Clostridium baratii str. Sullivan] |
| accDU729_2537 | AIY85179.1 | OG0000403 | CP006905.1:2649151–2650005 + | acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Clostridium baratii str. Sullivan] |
| accAU729_2538 | AIY82591.1 | OG0000885 | CP006905.1:2650007–2650822 + | acetyl-CoA carboxylase, carboxyl transferase, alpha subunit [Clostridium baratii str. Sullivan] |
| lctPU729_1778 | AIY83254.1 | OG0001228 | CP006905.1:1870940–1872466 + | transporter, lactate permease family protein [Clostridium baratii str. Sullivan] |
| crtU729_1463 | AIY83498.1 | OG0001394 | CP006905.1:1569042–1569824 + | enoyl-CoA hydratase/isomerase family protein [Clostridium baratii str. Sullivan] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.