Assembly
ASM80717v1
BioProject PRJNA258202 · BioSample SAMN02990137
GENOME-RESOLVED EVIDENCE
GCA_000807175.1
Clostridium pasteurianum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4351893 bp · GC 30.000%
Completeness 98.540% · contamination 0.810%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 1/8 | 0.125 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 3 |
| thl | acetyl-CoA acetyltransferase/thiolase | 2 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| ldh1CPAST_c17540 | AJA47824.1 | OG0000131 | CP009267.1:1892704–1893648 - | L-lactate dehydrogenase 1 [Clostridium pasteurianum DSM 525 = ATCC 6013] |
| ldhCPAST_c27630 | AJA48830.1 | OG0000131 | CP009267.1:2949382–2950224 - | L-lactate dehydrogenase [Clostridium pasteurianum DSM 525 = ATCC 6013] |
| accBCPAST_c39580 | AJA49996.1 | OG0000212 | CP009267.1:4223462–4223962 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium pasteurianum DSM 525 = ATCC 6013] |
| hbd1CPAST_c11840 | AJA47284.1 | OG0000229 | CP009267.1:1273236–1274171 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium pasteurianum DSM 525 = ATCC 6013] |
| mmgBCPAST_c18030 | AJA47873.1 | OG0000229 | CP009267.1:1940787–1941725 - | putative 3-hydroxybutyryl-CoA dehydrogenase [Clostridium pasteurianum DSM 525 = ATCC 6013] |
| hbd2CPAST_c28590 | AJA48925.1 | OG0000229 | CP009267.1:3062452–3063300 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium pasteurianum DSM 525 = ATCC 6013] |
| thlA1CPAST_c08620 | AJA46962.1 | OG0000234 | CP009267.1:946902–948080 + | acetyl-CoA acetyltransferase [Clostridium pasteurianum DSM 525 = ATCC 6013] |
| thlA2CPAST_c35710 | AJA49627.1 | OG0000234 | CP009267.1:3833874–3835052 - | acetyl-CoA acetyltransferase [Clostridium pasteurianum DSM 525 = ATCC 6013] |
| lctPCPAST_c23810 | AJA48451.1 | OG0001228 | CP009267.1:2549963–2551486 - | L-lactate permease [Clostridium pasteurianum DSM 525 = ATCC 6013] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.