Assembly
ASM80725v1
BioProject PRJNA258199 · BioSample SAMN02990135
GENOME-RESOLVED EVIDENCE
GCA_000807255.1
Clostridium pasteurianum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4352101 bp · GC 30.000%
Completeness 98.540% · contamination 0.810%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 1/8 | 0.125 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 3 |
| thl | acetyl-CoA acetyltransferase/thiolase | 2 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| ldh1CLPA_c17540 | AJA51812.1 | OG0000131 | CP009268.1:1892704–1893648 - | L-lactate dehydrogenase 1 [Clostridium pasteurianum DSM 525 = ATCC 6013] |
| ldhCLPA_c27630 | AJA52818.1 | OG0000131 | CP009268.1:2949590–2950432 - | L-lactate dehydrogenase [Clostridium pasteurianum DSM 525 = ATCC 6013] |
| accBCLPA_c39580 | AJA53984.1 | OG0000212 | CP009268.1:4223670–4224170 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium pasteurianum DSM 525 = ATCC 6013] |
| hbd1CLPA_c11840 | AJA51272.1 | OG0000229 | CP009268.1:1273236–1274171 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium pasteurianum DSM 525 = ATCC 6013] |
| mmgBCLPA_c18030 | AJA51861.1 | OG0000229 | CP009268.1:1940787–1941725 - | putative 3-hydroxybutyryl-CoA dehydrogenase [Clostridium pasteurianum DSM 525 = ATCC 6013] |
| hbd2CLPA_c28590 | AJA52913.1 | OG0000229 | CP009268.1:3062660–3063508 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium pasteurianum DSM 525 = ATCC 6013] |
| thlA1CLPA_c08620 | AJA50950.1 | OG0000234 | CP009268.1:946902–948080 + | acetyl-CoA acetyltransferase [Clostridium pasteurianum DSM 525 = ATCC 6013] |
| thlA2CLPA_c35710 | AJA53615.1 | OG0000234 | CP009268.1:3834082–3835260 - | acetyl-CoA acetyltransferase [Clostridium pasteurianum DSM 525 = ATCC 6013] |
| lctPCLPA_c23810 | AJA52439.1 | OG0001228 | CP009268.1:2550171–2551694 - | L-lactate permease [Clostridium pasteurianum DSM 525 = ATCC 6013] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.