Assembly
ASM81793v1
BioProject PRJNA222585 · BioSample SAMN03222820
GENOME-RESOLVED EVIDENCE
GCA_000817935.1
Clostridium botulinum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4365669 bp · GC 28.000%
Completeness 99.440% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accA | acetyl-CoA carboxylase carboxyltransferase alpha | 1 |
| accD | acetyl-CoA carboxylase carboxyltransferase beta | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| ldhT259_2826 | AJE13068.1 | OG0000131 | CP006908.1:2854090–2855046 + | L-lactate dehydrogenase [Clostridium botulinum CDC_1436] |
| thlAT259_896 | AJE12762.1 | OG0000234 | CP006908.1:902486–903664 + | acetyl-CoA acetyltransferase [Clostridium botulinum CDC_1436] |
| accDT259_466 | AJE09767.1 | OG0000403 | CP006908.1:466114–466983 + | acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Clostridium botulinum CDC_1436] |
| accAT259_467 | AJE11867.1 | OG0000885 | CP006908.1:467030–467869 + | acetyl-CoA carboxylase, carboxyl transferase, alpha subunit [Clostridium botulinum CDC_1436] |
| lctPT259_3377 | AJE11860.1 | OG0001228 | CP006908.1:3437913–3439436 - | transporter, lactate permease family protein [Clostridium botulinum CDC_1436] |
| crtT259_894 | AJE10565.1 | OG0001639 | CP006908.1:900829–901611 + | enoyl-CoA hydratase/isomerase family protein [Clostridium botulinum CDC_1436] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.