Assembly
ASM82793v1
BioProject PRJNA272603 · BioSample SAMN03284354
GENOME-RESOLVED EVIDENCE
GCA_000827935.1
Clostridium botulinum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3611897 bp · GC 27.500%
Completeness 98.860% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| fabG | 3-oxoacyl-ACP reductase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 2 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| hbdST13_01705 | AJF28450.1 | OG0000229 | CP010520.1:371633–372481 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium botulinum] |
| hbdST13_06585 | AJF29365.1 | OG0000229 | CP010520.1:1451674–1452603 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium botulinum] |
| thlST13_02275 | AJF28535.1 | OG0000234 | CP010520.1:477066–478247 + | acetyl-CoA acetyltransferase [Clostridium botulinum] |
| fabZST13_05210 | AJF29102.1 | OG0000785 | CP010520.1:1136027–1136455 + | 3-hydroxyacyl-ACP dehydratase [Clostridium botulinum] |
| lctPST13_06305 | AJF29313.1 | OG0001228 | CP010520.1:1379424–1380968 + | lactate permease [Clostridium botulinum] |
| crtST13_01685 | AJF28446.1 | OG0001394 | CP010520.1:367697–368479 + | crotonase [Clostridium botulinum] |
| crtST13_08735 | AJF29768.1 | OG0001639 | CP010520.1:1937289–1938065 - | crotonase [Clostridium botulinum] |
| fabGST13_05240 | AJF29108.1 | OG0004652 | CP010520.1:1141493–1142293 + | 3-oxoacyl-ACP reductase [Clostridium botulinum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.