Assembly
ASM83310v2
BioProject PRJNA260606 · BioSample SAMN03024437
GENOME-RESOLVED EVIDENCE
GCA_000833105.2
Clostridium beijerinckii · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 6485394 bp · GC 30.000%
Completeness 92.910% · contamination 8.990%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 4/8 | 0.500 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accA | acetyl-CoA carboxylase carboxyltransferase alpha | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 2 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 2 |
| accD | acetyl-CoA carboxylase carboxyltransferase beta | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 3 |
| crt | crotonase/enoyl-CoA hydratase | 7 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 2 |
| thl | acetyl-CoA acetyltransferase/thiolase | 2 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCLF65_01131 | AJG97746.1 | OG0000061 | CP010086.2:1248972–1250324 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium beijerinckii] |
| accCLF65_02721 | AJG99294.1 | OG0000061 | CP010086.2:2987181–2988524 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium beijerinckii] |
| ldhLF65_01066 | AJG97685.1 | OG0000131 | CP010086.2:1176369–1177319 + | L-lactate dehydrogenase [Clostridium beijerinckii] |
| ldhLF65_04582 | AJH01114.1 | OG0000131 | CP010086.2:5015998–5016948 - | L-lactate dehydrogenase [Clostridium beijerinckii] |
| ldhLF65_07015 | AMK50517.1 | OG0000131 | CP010086.2:6183967–6184914 - | L-lactate dehydrogenase [Clostridium beijerinckii] |
| accBLF65_01129 | AJG97744.1 | OG0000212 | CP010086.2:1248010–1248525 + | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium beijerinckii] |
| accBLF65_02720 | AJG99293.1 | OG0000212 | CP010086.2:2986701–2987162 + | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium beijerinckii] |
| hbdLF65_00359 | AJG97028.1 | OG0000229 | CP010086.2:363089–363937 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium beijerinckii] |
| hbdLF65_04304 | AJH00844.2 | OG0000229 | CP010086.2:4716106–4717044 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium beijerinckii] |
| thlLF65_00469 | AJG97113.1 | OG0000234 | CP010086.2:470426–471607 + | acetyl-CoA acetyltransferase [Clostridium beijerinckii] |
| thlLF65_04088 | AJH00630.1 | OG0000234 | CP010086.2:4472412–4473590 - | acetyl-CoA acetyltransferase [Clostridium beijerinckii] |
| accDLF65_01132 | AJG97747.1 | OG0000403 | CP010086.2:1250317–1251180 + | acetyl-CoA carboxylase carboxyl transferase subunit beta [Clostridium beijerinckii] |
| accALF65_01133 | AJG97748.1 | OG0000885 | CP010086.2:1251183–1252001 + | acetyl-CoA carboxylase carboxyl transferase subunit alpha [Clostridium beijerinckii] |
| adhELF65_00328 | AJG96997.1 | OG0001124 | CP010086.2:325224–327806 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium beijerinckii] |
| lctPLF65_02570 | AJG99145.1 | OG0001228 | CP010086.2:2801985–2803520 + | lactate permease [Clostridium beijerinckii] |
| crtLF65_00355 | AJG97024.1 | OG0001394 | CP010086.2:359061–359846 + | crotonase [Clostridium beijerinckii] |
| crtLF65_02206 | AJG98792.1 | OG0001394 | CP010086.2:2445088–2445873 + | crotonase [Clostridium beijerinckii] |
| crtLF65_05072 | AJH01600.1 | OG0001639 | CP010086.2:5605163–5605939 - | crotonase [Clostridium beijerinckii] |
| crtLF65_02210 | AJG98796.1 | OG0003747 | CP010086.2:2448993–2449418 + | enoyl-CoA hydratase [Clostridium beijerinckii] |
| crtLF65_03834 | AJH00387.1 | OG0003747 | CP010086.2:4197851–4198267 - | enoyl-CoA hydratase [Clostridium beijerinckii] |
| crtLF65_03317 | AJG99880.1 | OG0008680 | CP010086.2:3644773–3645609 - | crotonase [Clostridium beijerinckii] |
| crtLF65_03318 | AJG99881.1 | OG0008680 | CP010086.2:3645752–3646582 - | crotonase [Clostridium beijerinckii] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.