Assembly
CT1
BioProject PRJEB4542 · BioSample SAMEA3283140
GENOME-RESOLVED EVIDENCE
GCA_000967115.1
Clostridium tetani · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2865850 bp · GC 28.500%
Completeness 89.940% · contamination 0.160%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 1/3 | 0.333 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 0/8 | 0.000 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| bcd | butyryl-CoA dehydrogenase | 6 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| bcdBN906_00506 | CDI48539.1 | OG0000034 | HG530135.1:470920–472059 - | acyl-CoA/butyryl-CoA dehydrogenase [Clostridium tetani 12124569] |
| bcdBN906_02282 | CDI50268.1 | OG0000034 | HG530135.1:2206125–2207264 + | (3-hydroxy)butyryl-CoA dehydrogenase [Clostridium tetani 12124569] |
| bcdBN906_02285 | CDI50271.1 | OG0000034 | HG530135.1:2209174–2210316 - | butyryl-CoA dehydrogenase [Clostridium tetani 12124569] |
| ldhBN906_02192 | CDI50180.1 | OG0000131 | HG530135.1:2121054–2122004 - | L-lactate dehydrogenase [Clostridium tetani 12124569] |
| hbdBN906_02660 | CDI50625.1 | OG0000229 | HG530135.1:2574092–2574940 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium tetani 12124569] |
| thlBN906_00325 | CDI48370.1 | OG0000234 | HG530135.1:290912–292087 + | acetyl-CoA acetyltransferase [Clostridium tetani 12124569] |
| lctPBN906_01035 | CDI49043.1 | OG0001228 | HG530135.1:1024152–1025672 + | L-lactate permease [Clostridium tetani 12124569] |
| bcdBN906_00744 | CDI48765.1 | OG0001311 | HG530135.1:721819–722958 + | acyl-CoA/butyryl-CoA dehydrogenase [Clostridium tetani 12124569] |
| bcdBN906_02663 | CDI50628.1 | OG0001311 | HG530135.1:2576798–2577118 - | acyl-CoA/butyryl-CoA dehydrogenase [Clostridium tetani 12124569] |
| bcdBN906_02664 | CDI50629.1 | OG0001311 | HG530135.1:2577072–2577674 - | acyl-CoA/butyryl-CoA dehydrogenase [Clostridium tetani 12124569] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.