Assembly
ASM96837v1
BioProject PRJNA265889 · BioSample SAMN02721231
GENOME-RESOLVED EVIDENCE
GCA_000968375.1
Clostridium scatologenes · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 5749410 bp · GC 29.500%
Completeness 98.550% · contamination 3.310%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 1/3 | 0.333 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 0/2 | 0.000 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| etfA | electron transfer flavoprotein alpha subunit | 1 |
| accA | acetyl-CoA carboxylase carboxyltransferase alpha | 1 |
| accD | acetyl-CoA carboxylase carboxyltransferase beta | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 2 |
| thl | acetyl-CoA acetyltransferase/thiolase | 3 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| hbdCSCA_2636 | AKA69761.1 | OG0000229 | CP009933.1:2909794–2910639 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium scatologenes] |
| hbdCSCA_3691 | AKA70816.1 | OG0000229 | CP009933.1:3977087–3977932 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium scatologenes] |
| thlCSCA_2635 | AKA69760.1 | OG0000234 | CP009933.1:2908549–2909727 - | acetyl-CoA C-acetyltransferase [Clostridium scatologenes] |
| thlCSCA_3690 | AKA70815.1 | OG0000234 | CP009933.1:3975849–3977027 - | acetyl-CoA acetyltransferase [Clostridium scatologenes] |
| thlCSCA_4510 | AKA71635.1 | OG0000234 | CP009933.1:4868010–4869188 + | acetyl-CoA acetyltransferase [Clostridium scatologenes] |
| accDCSCA_4176 | AKA71301.1 | OG0000403 | CP009933.1:4505508–4506377 + | acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Clostridium scatologenes] |
| accACSCA_4177 | AKA71302.1 | OG0000885 | CP009933.1:4506420–4507265 + | acetyl-CoA carboxylase, carboxyl transferase, alpha subunit [Clostridium scatologenes] |
| crtCSCA_2637 | AKA69762.1 | OG0001639 | CP009933.1:2910719–2911498 - | Enoyl-CoA hydratase/isomerase [Clostridium scatologenes] |
| etfACSCA_0589 | AKA67714.1 | OG0004575 | CP009933.1:658359–659303 + | Electron transfer flavoprotein alpha subunit [Clostridium scatologenes] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.