Assembly
ASM97370v1
BioProject PRJNA257694 · BioSample SAMN02953999
GENOME-RESOLVED EVIDENCE
GCA_000973705.1
Clostridium sporogenes · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4141984 bp · GC 28.000%
Completeness 95.650% · contamination 2.320%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 0/8 | 0.000 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 6/6 | 1.000 | Complete marker set |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| rnfB | Rnf complex subunit B | 1 |
| rnfC | Rnf complex subunit C | 1 |
| rnfD | Rnf complex subunit D | 1 |
| rnfE | Rnf complex subunit E | 1 |
| rnfG | Rnf complex subunit G | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 3 |
| ldh | L-lactate dehydrogenase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| rnfCCLSPO_c04010 | AKC61131.1 | OG0000037 | CP009225.1:430500–431819 + | electron transport complex protein RnfC [Clostridium sporogenes] |
| ldhCLSPO_c15460 | AKC62266.1 | OG0000131 | CP009225.1:1694895–1695851 - | L-lactate dehydrogenase Ldh [Clostridium sporogenes] |
| hbdCLSPO_c33040 | AKC64017.1 | OG0000229 | CP009225.1:3623050–3623880 - | 3-hydroxybutyryl-CoA dehydrogenase Hbd [Clostridium sporogenes] |
| thlACLSPO_c33030 | AKC64016.1 | OG0000234 | CP009225.1:3621847–3623025 - | acetyl-CoA acetyltransferase ThlA [Clostridium sporogenes] |
| adhE2CLSPO_c21210 | AKC62841.1 | OG0000343 | CP009225.1:2367127–2368725 - | aldehyde-alcohol dehydrogenase AdhE [Clostridium sporogenes] |
| adhE3CLSPO_c21320 | AKC62852.1 | OG0000343 | CP009225.1:2377261–2378754 - | aldehyde-alcohol dehydrogenase AdhE [Clostridium sporogenes] |
| adhE1CLSPO_c03750 | AKC61105.1 | OG0001124 | CP009225.1:396201–398789 + | aldehyde-alcohol dehydrogenase AdhE [Clostridium sporogenes] |
| rnfGCLSPO_c04030 | AKC61133.1 | OG0001254 | CP009225.1:432774–433346 + | electron transport complex protein RnfG [Clostridium sporogenes] |
| rnfECLSPO_c04040 | AKC61134.1 | OG0001320 | CP009225.1:433346–433945 + | electron transport complex protein RnfE [Clostridium sporogenes] |
| rnfACLSPO_c04050 | AKC61135.1 | OG0001328 | CP009225.1:433997–434575 + | electron transport complex protein RnfA [Clostridium sporogenes] |
| rnfDCLSPO_c04020 | AKC61132.1 | OG0001342 | CP009225.1:431842–432774 + | electron transport complex protein RnfD [Clostridium sporogenes] |
| rnfBCLSPO_c04060 | AKC61136.1 | OG0001429 | CP009225.1:434589–435422 + | electron transport complex protein RnfB [Clostridium sporogenes] |
| lldDCLSPO_c32150 | AKC63933.1 | OG0001572 | CP009225.1:3519651–3520664 - | L-lactate dehydrogenase [Clostridium sporogenes] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.