Assembly
ASM102020v1
BioProject PRJNA285281 · BioSample SAMN03742637
GENOME-RESOLVED EVIDENCE
GCA_001020205.1
Clostridium sporogenes · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4142990 bp · GC 28.000%
Completeness 95.630% · contamination 2.320%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 1/8 | 0.125 | Partial/absent |
| lactate_entry_support | 0/2 | 0.000 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| fabZ | 3-hydroxyacyl-ACP dehydratase | 4 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| fabZCLSPOx_11245 | AKJ90191.1 | OG0000119 | CP011663.1:2502419–2504113 + | 3-hydroxyacyl-ACP dehydratase [Clostridium sporogenes] |
| hbdCLSPOx_16540 | AKJ91156.1 | OG0000229 | CP011663.1:3624057–3624887 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium sporogenes] |
| thlCLSPOx_16535 | AKJ91155.1 | OG0000234 | CP011663.1:3622854–3624032 - | acetyl-CoA acetyltransferase [Clostridium sporogenes] |
| fabZCLSPOx_18920 | AKJ91566.1 | OG0000785 | CP011663.1:4096027–4096461 - | 3-hydroxyacyl-ACP dehydratase [Clostridium sporogenes] |
| fabZCLSPOx_16755 | AKJ91197.1 | OG0001208 | CP011663.1:3666182–3667441 - | 3-hydroxyacyl-ACP dehydratase [Clostridium sporogenes] |
| crtCLSPOx_16545 | AKJ91157.1 | OG0001639 | CP011663.1:3624907–3625689 - | crotonase [Clostridium sporogenes] |
| fabZCLSPOx_11240 | AKJ90190.1 | OG0004330 | CP011663.1:2501145–2502416 + | 3-hydroxyacyl-ACP dehydratase [Clostridium sporogenes] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.