Assembly
ASM103862v1
BioProject PRJNA285141 · BioSample SAMN03740584
GENOME-RESOLVED EVIDENCE
GCA_001038625.1
Clostridium carboxidivorans · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 5752782 bp · GC 30.000%
Completeness 99.380% · contamination 3.420%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| fabG | 3-oxoacyl-ACP reductase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 3 |
| lctP | L-lactate permease | 2 |
| crt | crotonase/enoyl-CoA hydratase | 3 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 3 |
| thl | acetyl-CoA acetyltransferase/thiolase | 3 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| fabZCcar_12345 | AKN31610.1 | OG0000119 | CP011803.1:2816305–2817981 - | 3-hydroxyacyl-ACP dehydratase [Clostridium carboxidivorans P7] |
| hbdCcar_01405 | AKN29571.1 | OG0000229 | CP011803.1:287908–288753 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium carboxidivorans P7] |
| hbdCcar_22100 | AKN33367.1 | OG0000229 | CP011803.1:4891805–4892746 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium carboxidivorans P7] |
| hbdCcar_22785 | AKN33500.1 | OG0000229 | CP011803.1:5046989–5047834 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium carboxidivorans P7] |
| thlCcar_01410 | AKN29572.1 | OG0000234 | CP011803.1:288820–289998 + | acetyl-CoA acetyltransferase [Clostridium carboxidivorans P7] |
| thlCcar_04220 | AKN30073.1 | OG0000234 | CP011803.1:981617–982777 - | acetyl-CoA acetyltransferase [Clostridium carboxidivorans P7] |
| thlCcar_22790 | AKN33501.1 | OG0000234 | CP011803.1:5047904–5049082 + | acetyl-CoA acetyltransferase [Clostridium carboxidivorans P7] |
| fabZCcar_20425 | AKN33088.1 | OG0000785 | CP011803.1:4562482–4562943 - | 3-hydroxyacyl-ACP dehydratase [Clostridium carboxidivorans P7] |
| fabZCcar_18330 | AKN32700.1 | OG0001208 | CP011803.1:4116504–4117763 - | 3-hydroxyacyl-ACP dehydratase [Clostridium carboxidivorans P7] |
| lctPCcar_02265 | AKN29733.1 | OG0001228 | CP011803.1:520824–522332 + | lactate permease [Clostridium carboxidivorans P7] |
| lctPCcar_11420 | AKN31434.1 | OG0001228 | CP011803.1:2605846–2607432 - | lactate permease [Clostridium carboxidivorans P7] |
| crtCcar_01400 | AKN29570.1 | OG0001639 | CP011803.1:287048–287827 + | crotonase [Clostridium carboxidivorans P7] |
| crtCcar_22780 | AKN33499.1 | OG0001639 | CP011803.1:5046136–5046915 + | crotonase [Clostridium carboxidivorans P7] |
| crtCcar_01415 | AKN29573.1 | OG0003747 | CP011803.1:290166–290594 + | enoyl-CoA hydratase [Clostridium carboxidivorans P7] |
| fabGCcar_17355 | AKN32530.1 | OG0004652 | CP011803.1:3907909–3908667 - | 3-oxoacyl-ACP reductase [Clostridium carboxidivorans P7] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.