Assembly
ASM130473v1
BioProject PRJNA259939 · BioSample SAMN03140316
GENOME-RESOLVED EVIDENCE
GCA_001304735.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3395109 bp · GC 28.500%
Completeness 95.020% · contamination 4.270%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 1/3 | 0.333 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 0/8 | 0.000 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 6/6 | 1.000 | Complete marker set |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| rnfB | Rnf complex subunit B | 1 |
| rnfC | Rnf complex subunit C | 1 |
| rnfD | Rnf complex subunit D | 1 |
| rnfE | Rnf complex subunit E | 1 |
| rnfG | Rnf complex subunit G | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| bcd | butyryl-CoA dehydrogenase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| bcdFORC3_0102 | ALG47479.1 | OG0000034 | CP009557.1:148920–150056 + | Butyryl-CoA dehydrogenase [Clostridium perfringens] |
| rnfCFORC3_1594 | ALG48971.1 | OG0000037 | CP009557.1:1924478–1925788 + | Electron transport complex protein RnfC [Clostridium perfringens] |
| ldhFORC3_0108 | ALG47485.1 | OG0000131 | CP009557.1:157041–157994 - | L-lactate dehydrogenase [Clostridium perfringens] |
| hbdFORC3_2518 | ALG49895.1 | OG0000229 | CP009557.1:2935903–2936751 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlFORC3_2421 | ALG49798.1 | OG0000234 | CP009557.1:2819748–2820926 - | Acetyl-CoA acetyltransferase [Clostridium perfringens] |
| lctPFORC3_0319 | ALG47696.1 | OG0001228 | CP009557.1:414280–415812 + | L-lactate permease [Clostridium perfringens] |
| rnfGFORC3_1279 | ALG48656.1 | OG0001254 | CP009557.1:1535959–1536993 + | Electron transport complex protein RnfG [Clostridium perfringens] |
| bcdFORC3_2521 | ALG49898.1 | OG0001311 | CP009557.1:2938692–2939831 - | Butyryl-CoA dehydrogenase [Clostridium perfringens] |
| rnfEFORC3_1280 | ALG48657.1 | OG0001320 | CP009557.1:1537011–1537679 + | Electron transport complex protein RnfE [Clostridium perfringens] |
| rnfAFORC3_1281 | ALG48658.1 | OG0001328 | CP009557.1:1537708–1538283 + | Electron transport complex protein RnfA [Clostridium perfringens] |
| rnfDFORC3_1595 | ALG48972.1 | OG0001342 | CP009557.1:1925802–1926782 + | Electron transport complex protein RnfD [Clostridium perfringens] |
| rnfBFORC3_1282 | ALG48659.1 | OG0001429 | CP009557.1:1538300–1539121 + | Electron transport complex protein RnfB [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.