Assembly
ASM145606v2
BioProject PRJNA304074 · BioSample SAMN04293668
GENOME-RESOLVED EVIDENCE
GCA_001456065.2
Clostridium butyricum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4627894 bp · GC 28.500%
Completeness 95.470% · contamination 2.460%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 4/8 | 0.500 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accA | acetyl-CoA carboxylase carboxyltransferase alpha | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 2 |
| accD | acetyl-CoA carboxylase carboxyltransferase beta | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 4 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCATN24_05920 | ALP89686.1 | OG0000061 | CP013252.1:1275103–1276449 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium butyricum] |
| accCATN24_07075 | ALP89904.1 | OG0000061 | CP013252.1:1552538–1553890 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium butyricum] |
| ldhATN24_06725 | ALP89837.1 | OG0000131 | CP013252.1:1475076–1476029 + | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhATN24_09365 | ALP90340.1 | OG0000131 | CP013252.1:2074693–2075646 + | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhATN24_14975 | ALP91392.1 | OG0000131 | CP013252.1:3302507–3303445 + | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhATN24_17815 | ALR90310.1 | OG0000131 | CP013489.1:161678–162622 - | L-lactate dehydrogenase [Clostridium butyricum] |
| accBATN24_05915 | ALP89685.1 | OG0000212 | CP013252.1:1274599–1275060 + | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium butyricum] |
| hbdATN24_03170 | ALP89196.1 | OG0000229 | CP013252.1:683076–683924 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium butyricum] |
| thlATN24_03775 | ALP89283.1 | OG0000234 | CP013252.1:797699–798880 + | acetyl-CoA acetyltransferase [Clostridium butyricum] |
| accDATN24_07080 | ALP89905.1 | OG0000403 | CP013252.1:1553883–1554776 + | acetyl-CoA carboxylase carboxyl transferase subunit beta [Clostridium butyricum] |
| accAATN24_07085 | ALP89906.1 | OG0000885 | CP013252.1:1554769–1555587 + | acetyl-CoA carboxylase carboxyl transferase subunit alpha [Clostridium butyricum] |
| adhEATN24_00765 | ALP88781.1 | OG0001124 | CP013252.1:177474–180104 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium butyricum] |
| lctPATN24_08890 | ALP90249.1 | OG0001228 | CP013252.1:1957894–1959435 + | lactate permease [Clostridium butyricum] |
| crtATN24_03150 | ALP89192.1 | OG0001394 | CP013252.1:679075–679860 + | crotonase [Clostridium butyricum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.