Assembly
ASM146517v1
BioProject PRJNA303063 · BioSample SAMN04285352
GENOME-RESOLVED EVIDENCE
GCA_001465175.1
Clostridium butyricum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4618327 bp · GC 28.500%
Completeness 94.270% · contamination 1.240%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 4/8 | 0.500 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accA | acetyl-CoA carboxylase carboxyltransferase alpha | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 2 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 2 |
| accD | acetyl-CoA carboxylase carboxyltransferase beta | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 4 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCATD26_04480 | ALS16141.1 | OG0000061 | CP013352.1:963605–964951 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium butyricum] |
| accCATD26_05625 | ALS16357.1 | OG0000061 | CP013352.1:1239121–1240473 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium butyricum] |
| ldhATD26_05275 | ALS16289.1 | OG0000131 | CP013352.1:1161660–1162613 + | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhATD26_07915 | ALS16794.1 | OG0000131 | CP013352.1:1758619–1759572 + | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhATD26_13680 | ALS17888.1 | OG0000131 | CP013352.1:3010940–3011878 + | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhATD26_20280 | ALS19197.1 | OG0000131 | CP013353.1:730372–731316 - | L-lactate dehydrogenase [Clostridium butyricum] |
| accBATD26_04475 | ALS16140.1 | OG0000212 | CP013352.1:963101–963562 + | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium butyricum] |
| accBATD26_05615 | ALS16355.1 | OG0000212 | CP013352.1:1238174–1238680 + | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Clostridium butyricum] |
| hbdATD26_01740 | ALS15660.1 | OG0000229 | CP013352.1:370811–371659 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium butyricum] |
| thlATD26_02345 | ALS15747.1 | OG0000234 | CP013352.1:485431–486612 + | acetyl-CoA acetyltransferase [Clostridium butyricum] |
| accDATD26_05630 | ALS16358.1 | OG0000403 | CP013352.1:1240466–1241359 + | acetyl-CoA carboxylase carboxyl transferase subunit beta [Clostridium butyricum] |
| accAATD26_05635 | ALS16359.1 | OG0000885 | CP013352.1:1241352–1242170 + | acetyl-CoA carboxylase carboxyl transferase subunit alpha [Clostridium butyricum] |
| adhEATD26_16370 | ALS18385.1 | OG0001124 | CP013352.1:3692389–3695019 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium butyricum] |
| lctPATD26_07435 | ALS16703.1 | OG0001228 | CP013352.1:1642669–1644210 + | lactate permease [Clostridium butyricum] |
| crtATD26_01720 | ALS15656.1 | OG0001394 | CP013352.1:366810–367595 + | crotonase [Clostridium butyricum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.