Assembly
ASM148472v1
BioProject PRJNA291963 · BioSample SAMN03956958
GENOME-RESOLVED EVIDENCE
GCA_001484725.1
Clostridium autoethanogenum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4352446 bp · GC 31.000%
Completeness 98.760% · contamination 1.860%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 2/3 | 0.667 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 0/2 | 0.000 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| etfA | electron transfer flavoprotein alpha subunit | 2 |
| rnfC | Rnf complex subunit C | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 2 |
| accA | acetyl-CoA carboxylase carboxyltransferase alpha | 1 |
| accD | acetyl-CoA carboxylase carboxyltransferase beta | 1 |
| bcd | butyryl-CoA dehydrogenase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 2 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| bcdCLAU_1740 | ALU36169.1 | OG0000034 | CP012395.1:1923875–1925017 - | Butyryl-CoA dehydrogenase [Clostridium autoethanogenum DSM 10061] |
| rnfCCLAU_3144 | ALU37571.1 | OG0000037 | CP012395.1:3481277–3482650 + | Electron transport complex protein rnfC [Clostridium autoethanogenum DSM 10061] |
| etfACLAU_1738 | ALU36167.1 | OG0000082 | CP012395.1:1922048–1923058 - | Electron transfer flavoprotein alpha subunit [Clostridium autoethanogenum DSM 10061] |
| hbdCLAU_0402 | ALU34831.1 | OG0000229 | CP012395.1:458236–459192 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium autoethanogenum DSM 10061] |
| hbdCLAU_1545 | ALU35974.1 | OG0000229 | CP012395.1:1701015–1701959 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium autoethanogenum DSM 10061] |
| thlCLAU_0409 | ALU34838.1 | OG0000234 | CP012395.1:465821–467020 - | Acetyl-CoA acetyltransferase [Clostridium autoethanogenum DSM 10061] |
| accDCLAU_1992 | ALU36421.1 | OG0000403 | CP012395.1:2184616–2185491 - | Acetyl-CoA carboxylase carboxyl transferase subunit beta [Clostridium autoethanogenum DSM 10061] |
| etfACLAU_3387 | ALU37814.1 | OG0000689 | CP012395.1:3725194–3726171 + | Electron transfer flavoprotein alpha subunit [Clostridium autoethanogenum DSM 10061] |
| accACLAU_1991 | ALU36420.1 | OG0000885 | CP012395.1:2183743–2184588 - | Acetyl-CoA carboxylase carboxyl transferase subunit alpha [Clostridium autoethanogenum DSM 10061] |
| adhE1CLAU_3655 | ALU38082.1 | OG0001124 | CP012395.1:4030736–4033348 + | Bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium autoethanogenum DSM 10061] |
| adhE2CLAU_3656 | ALU38083.1 | OG0001124 | CP012395.1:4033500–4036133 + | Bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium autoethanogenum DSM 10061] |
| bcdCLAU_1742 | ALU36171.1 | OG0008381 | CP012395.1:1926350–1927522 - | Butyryl-CoA dehydrogenase [Clostridium autoethanogenum DSM 10061] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.