GENOME-RESOLVED EVIDENCE

GCA_001579765.1

Clostridium perfringens · Complete Genome

View versioned NCBI assembly →

Assembly

ASM157976v1

BioProject PRJNA276414 · BioSample SAMN03372134

Quality metadata

Genome size 3571229 bp · GC 28.000%

Completeness 96.180% · contamination 5.830%

Pathway marker completeness

Module	Markers	Fraction	Call
bcd_etf_module	0/3	0.000	Partial/absent
ethanol_entry_support	0/1	0.000	Partial/absent
fatty_acid_biosynthesis_core	1/8	0.125	Partial/absent
lactate_entry_support	1/2	0.500	Partial/absent
reverse_beta_oxidation_core	3/4	0.750	Partial/absent
rnf_complex	0/6	0.000	Partial/absent

Detected markers

Marker	Function	Copies
fabZ	3-hydroxyacyl-ACP dehydratase	1
lctP	L-lactate permease	1
crt	crotonase/enoyl-CoA hydratase	2
hbd	3-hydroxybutyryl-CoA dehydrogenase	1
thl	acetyl-CoA acetyltransferase/thiolase	1

Profile-HMM marker predictions

Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.

Marker / protein	Confidence	Review status	Score / coverage	Supporting evidence
No profile-HMM predictions for this assembly.

Protein-level evidence

Gene	Protein	Orthogroup	Coordinates	Annotation
hbdJFP55_13115	AMN33793.1	OG0000229	CP010993.1:2942712–2943560 -	3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens]
thlJFP55_12450	AMN33689.1	OG0000234	CP010993.1:2815990–2817168 -	acetyl-CoA acetyltransferase [Clostridium perfringens]
fabZJFP55_07120	AMN32685.1	OG0000785	CP010993.1:1625556–1625975 +	3-hydroxyacyl-ACP dehydratase [Clostridium perfringens]
lctPJFP55_01665	AMN31684.1	OG0001228	CP010993.1:390117–391640 +	lactate permease [Clostridium perfringens]
crtJFP55_13135	AMN33797.1	OG0001394	CP010993.1:2946687–2947469 -	crotonase [Clostridium perfringens]
crtJFP55_00620	AMN31495.1	OG0001639	CP010993.1:141605–142381 +	crotonase [Clostridium perfringens]

These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.