GENOME-RESOLVED EVIDENCE

GCA_001579785.1

Clostridium perfringens · Complete Genome

View versioned NCBI assembly →

Assembly

ASM157978v1

BioProject PRJNA276513 · BioSample SAMN03377063

Quality metadata

Genome size 4070811 bp · GC 28.000%

Completeness 96.680% · contamination 11.030%

Pathway marker completeness

Module	Markers	Fraction	Call
bcd_etf_module	0/3	0.000	Partial/absent
ethanol_entry_support	0/1	0.000	Partial/absent
fatty_acid_biosynthesis_core	1/8	0.125	Partial/absent
lactate_entry_support	0/2	0.000	Partial/absent
reverse_beta_oxidation_core	3/4	0.750	Partial/absent
rnf_complex	0/6	0.000	Partial/absent

Detected markers

Marker	Function	Copies
fabZ	3-hydroxyacyl-ACP dehydratase	1
crt	crotonase/enoyl-CoA hydratase	2
hbd	3-hydroxybutyryl-CoA dehydrogenase	1
thl	acetyl-CoA acetyltransferase/thiolase	1

Profile-HMM marker predictions

Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.

Marker / protein	Confidence	Review status	Score / coverage	Supporting evidence
No profile-HMM predictions for this assembly.

Protein-level evidence

Gene	Protein	Orthogroup	Coordinates	Annotation
hbdJFP838_13920	AMN36794.1	OG0000229	CP010994.1:3115683–3116531 -	3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens]
thlJFP838_13265	AMN36691.1	OG0000234	CP010994.1:2991324–2992502 -	acetyl-CoA acetyltransferase [Clostridium perfringens]
fabZJFP838_07520	AMN35604.1	OG0000785	CP010994.1:1698646–1699065 +	3-hydroxyacyl-ACP dehydratase [Clostridium perfringens]
crtJFP838_13940	AMN36798.1	OG0001394	CP010994.1:3119657–3120439 -	crotonase [Clostridium perfringens]
crtJFP838_00625	AMN34321.1	OG0001639	CP010994.1:141136–141912 +	crotonase [Clostridium perfringens]

These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.